Browse Element(s) Details


OsAffx.15622.1.S1_at

Description tigr:9634.m02595
TID=OsAffx.15622.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2621011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26160OsAffx.28610.2.S1_x_at11/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.2.S1_at10/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.1.S1_at6/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.1.S1_x_at4/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.3.S1_at3/116+15301894..15304365hypothetical protein
LOC_Os06g26160Os.4760.1.S1_at1/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.4.S1_x_at1/116+15301894..15304365hypothetical protein
LOC_Os06g26170OsAffx.4944.1.S1_at10/116+15310053..15311897hypothetical protein
LOC_Os06g26180OsAffx.27828.1.S1_at11/116+15313826..15315157hypothetical protein
LOC_Os06g26180OsAffx.23345.1.S1_at2/116+15313826..15315157hypothetical protein
LOC_Os06g26180OsAffx.28650.1.S1_x_at1/116+15313826..15315157hypothetical protein
LOC_Os06g26190Os.21300.2.S1_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26190Os.21300.2.S1_x_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26190OsAffx.27854.1.S1_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26210OsAffx.15622.1.S1_at11/116+15328732..15331084hypothetical protein
LOC_Os06g26234OsAffx.15623.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.27031.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.28472.1.A1_x_at10/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.13933.1.S1_x_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.57509.1.A1_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15622.1.S1_at--543--8391Chr06:15329305..15329329 (25 bp)
GGCGCACGCGACTACACCCGGGAAA
LOC_Os06g26210
OsAffx.15622.1.S1_at--534--9851Chr06:15329293..15329317 (25 bp)
TACACCCGGGAAACGACGCAGCACA
LOC_Os06g26210
OsAffx.15622.1.S1_at--189--9351Chr06:15329251..15329275 (25 bp)
TCGCGTGACTAACGCGGCTCGACTT
LOC_Os06g26210
OsAffx.15622.1.S1_at--152--3791Chr06:15329234..15329258 (25 bp)
CTCGACTTCGTCTGGTGCACGCCTA
LOC_Os06g26210
OsAffx.15622.1.S1_at--217--9031Chr06:15329219..15329243 (25 bp)
TGCACGCCTACGTTCTCTGGGCGCT
LOC_Os06g26210
OsAffx.15622.1.S1_at--86--9331Chr06:15329103..15329127 (25 bp)
TCCCTTGTTGTCCAGGCGCTCTACG
LOC_Os06g26210
OsAffx.15622.1.S1_at--223--2011Chr06:15329007..15329031 (25 bp)
ACTCAGGGATTTTGCCTCCCTCGAT
LOC_Os06g26210
OsAffx.15622.1.S1_at--442--6251Chr06:15328985..15329009 (25 bp)
GATGTCCGGGTGTTCTTTGCCGACC
LOC_Os06g26210
OsAffx.15622.1.S1_at--718--9591Chr06:15328820..15328844 (25 bp)
TCATCGTCCGGGTGCCCTTTGCCGA
LOC_Os06g26210
OsAffx.15622.1.S1_at--681--9331Chr06:15328773..15328797 (25 bp)
TCGCCTCATTCATCGTCCGGGTGGT
LOC_Os06g26210
OsAffx.15622.1.S1_at--883--491Chr06:15328762..15328786 (25 bp)
ATCGTCCGGGTGGTCTTCGCCGACT
LOC_Os06g26210
Target Sequence 
GGCGCACGCGACTACACCCGGGAAACGACGCAGCACACCTGGGGGCTTCGGCCCTCGCGTGACTAACGCGGCTCGACTTC
GTCTGGTGCACGCCTACGTTCTCTGGGCGCTCTACACCGACCTCACCACGGACTCAAGGATTTCGCCTCCCTCGACATCC
GGGTGTTCTTCGCCGACCCGCCACGGACTTGGGGGCTTTGCCTCCCTTGTTGTCCAGGCGCTCTACGCCGACCCACCAAC
GGATTCGGGGGCTTCGCCTCCCTTGCTGCCCAGGCGTTCTACACCGACCTCACCACGGACTCAGGGATTTTGCCTCCCTC
GATGTCCGGGTGTTCTTTGCCGACCCGCCACGGACTTGGGGGCTTCGCCTCCCTCGTTGTCCGGGCGCTCTGCACCGACA
CCGCCACAGGCTCGGGAGCTTCGCCTCCCCCGTCGTCCGGGTGCTCTACGCCGACCTCGCCACGGACTCGGGGGCTTCGC
CTCCCTCATCGTCCGGGTGCCCTTTGCCGACCTCGCCACGGACTCGGGGGCTTCGCCTCATTCATCGTCCGGGTGGTCTT
CGCCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis