Browse Element(s) Details

OsAffx.15786.1.S1_at

Description

tigr:9634.m03511
TID=OsAffx.15786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g36910	11/11	Rf1 protein, mitochondrial precursor, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g36870	NA	NA	6	+	21722223..21724393	transposon protein, putative, Pong sub-class
LOC_Os06g36880	Os.53027.1.S1_at	11/11	6	+	21729405..21732640	Cysteine synthase, putative, expressed
LOC_Os06g36890	Os.49494.1.S1_at	1/11	6	+	21734128..21738841	Glycosyl transferase, putative
LOC_Os06g36900	OsAffx.31869.1.S1_at	11/11	6	+	21740287..21741402	retrotransposon protein, putative, unclassified
LOC_Os06g36900	OsAffx.31869.5.S1_x_at	4/11	6	+	21740287..21741402	retrotransposon protein, putative, unclassified
LOC_Os06g36900	OsAffx.31869.3.S1_s_at	3/11	6	+	21740287..21741402	retrotransposon protein, putative, unclassified
LOC_Os06g36900	OsAffx.31869.4.S1_x_at	1/11	6	+	21740287..21741402	retrotransposon protein, putative, unclassified
LOC_Os06g36910	OsAffx.15786.1.S1_at	11/11	6	+	21749359..21751422	Rf1 protein, mitochondrial precursor, putative
LOC_Os06g36920	OsAffx.5033.1.S1_at	11/11	6	+	21754621..21757567	thromboxane-A synthase, putative, expressed
LOC_Os06g36920	OsAffx.5032.1.S1_at	7/11	6	+	21754621..21757567	thromboxane-A synthase, putative, expressed
LOC_Os06g36930	OsAffx.27969.1.S1_x_at	11/11	6	+	21760307..21761424	HSF-type DNA-binding domain containing protein
LOC_Os06g36940	OsAffx.15787.3.S1_at	10/11	6	+	21762419..21764047	expressed protein
LOC_Os06g36950	Os.20602.2.S1_x_at	11/11	6	+	21764817..21767012	hAT family dimerisation domain containing protein
LOC_Os06g36960	OsAffx.29755.2.S1_x_at	11/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.2.S1_at	11/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.4.S1_x_at	9/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.5.S1_x_at	9/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.1.S1_s_at	6/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.3.S1_x_at	4/11	6	+	21771555..21778666	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15786.1.S1_at--941--281	1	Chr06:21750835..21750859 (25 bp)	AAGATTCTAGATTCTGGGTTCCAGC	LOC_Os06g36910
OsAffx.15786.1.S1_at--1117--389	1	Chr06:21750848..21750872 (25 bp)	CTGGGTTCCAGCCTAATGTAATAAC	LOC_Os06g36910
OsAffx.15786.1.S1_at--844--619	1	Chr06:21750919..21750943 (25 bp)	GAGGCAATCTCCCATTTCAACAAAA	LOC_Os06g36910
OsAffx.15786.1.S1_at--1067--701	1	Chr06:21750970..21750994 (25 bp)	GTACAGGCTTACACTGCTTTGGTTG	LOC_Os06g36910
OsAffx.15786.1.S1_at--487--789	1	Chr06:21751050..21751074 (25 bp)	GGTTCACAAAGGTATGTCTCTGGAC	LOC_Os06g36910
OsAffx.15786.1.S1_at--197--125	1	Chr06:21751077..21751101 (25 bp)	AGTTGTGTACACAGCTCTTCTCGAT	LOC_Os06g36910
OsAffx.15786.1.S1_at--421--153	1	Chr06:21751089..21751113 (25 bp)	AGCTCTTCTCGATGGGTACCTAAAA	LOC_Os06g36910
OsAffx.15786.1.S1_at--590--213	1	Chr06:21751113..21751137 (25 bp)	ACAGGGAAACCTCCATGATGCCTTT	LOC_Os06g36910
OsAffx.15786.1.S1_at--198--905	1	Chr06:21751169..21751193 (25 bp)	TGCAGCTTGATCTCTTTTGCTACAC	LOC_Os06g36910
OsAffx.15786.1.S1_at--28--485	1	Chr06:21751187..21751211 (25 bp)	GCTACACTTGTTTTATATCGGGTTT	LOC_Os06g36910
OsAffx.15786.1.S1_at--125--567	1	Chr06:21751265..21751289 (25 bp)	GACATGGTATTGCTCCTGATAGGGC	LOC_Os06g36910

Target Sequence

AAGATTCTAGATTCTGGGTTCCAGCCTAATGTAATAACCTATTGTGCATTGATTGATGGATTGTGTAAAGCAGGATCGAT
CGATGAGGCAATCTCCCATTTCAACAAAATGAGGGACTTAGGACTAGATCCTAATGTACAGGCTTACACTGCTTTGGTTG
ATGGTTTATGCAAGAATGGTTGTTTGAACGAGGCTGTGCAGTTGTTTAATGAAATGGTTCACAAAGGTATGTCTCTGGAC
AAAGTTGTGTACACAGCTCTTCTCGATGGGTACCTAAAACAGGGAAACCTCCATGATGCCTTTGCCCTCAAGGCTAAGAT
GATTGATAGCGGTTTGCAGCTTGATCTCTTTTGCTACACTTGTTTTATATCGGGTTTCTGTAATCTAAACATGATGCCAG
AAGCTAGAGAAGTTTTTTCAGAGATGATTGGACATGGTATTGCTCCTGATAGGGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis