Browse Element(s) Details


OsAffx.15826.1.S1_at

Description tigr:9634.m03710
TID=OsAffx.15826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g388709/11hypothetical protein
LOC_Os06g388402/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38810OsAffx.20993.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810OsAffx.27266.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810Os.51832.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38820OsAffx.19542.3.S1_x_at3/116+23043215..23047155retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g38830OsAffx.15825.1.S1_at11/116+23048806..23051319Leucine Rich Repeat family protein, expressed
LOC_Os06g38840OsAffx.15826.1.S1_at2/116+23053425..23055664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38840Os.46459.1.S1_at1/116+23053425..23055664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38850OsAffx.27999.1.S1_at11/116+23056312..23056587hypothetical protein
LOC_Os06g38870OsAffx.15826.1.S1_at9/116+23065612..23067154hypothetical protein
LOC_Os06g38870Os.19061.2.S1_at1/116+23065612..23067154hypothetical protein
LOC_Os06g38880OsAffx.5053.1.S1_at11/116+23068891..23069148hypothetical protein
LOC_Os06g38890Os.41695.15.S1_s_at11/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.3.S1_x_at4/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.2.S1_x_at3/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.5.S1_x_at3/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.4.S1_x_at1/116+23072514..23078699hypothetical protein
LOC_Os06g38900NANA6+23080487..23083994SWIM zinc finger family protein
LOC_Os06g38910OsAffx.15828.1.S1_at10/116+23086241..23087197hypothetical protein
LOC_Os06g38920OsAffx.19682.1.S1_at8/116+23087900..23091073transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15826.1.S1_at--135--152Chr06:23065647..23065671 (25 bp)
ATTACGCGCGATAATCCAGCTCGTG
LOC_Os06g38870
OsAffx.15826.1.S1_at--749--10832Chr06:23065682..23065706 (25 bp)
TTGTGATCGGCAGTGGCATCCTCGT
LOC_Os06g38870
OsAffx.15826.1.S1_at--578--5391NONE
GAAGCAGTGGCAATGGTCGACCAAC
NONE
OsAffx.15826.1.S1_at--156--3191Chr06:23066675..23066695 (21 bp)
CAATGGTCGACCAACTGGTACGGGT
LOC_Os06g38870
OsAffx.15826.1.S1_at--509--8131Chr06:23066686..23066710 (25 bp)
TGGTACGGGTGGTCCGTCTACCGCA
LOC_Os06g38870
OsAffx.15826.1.S1_at--129--9971Chr06:23066704..23066728 (25 bp)
TACCGCATCACCGTACAGGACATAT
LOC_Os06g38870
OsAffx.15826.1.S1_at--564--7011NONE
GTACAGGACATATGGCAGACGGGCT
NONE
OsAffx.15826.1.S1_at--157--5051Chr06:23066730..23067057 (25 bp)
GCAGACGGGCTGAAATTTATTTTGA
LOC_Os06g38870
OsAffx.15826.1.S1_at--31--10791Chr06:23067054..23067078 (25 bp)
TTGATTTCAGCCGAATTTCTCACCG
LOC_Os06g38870
OsAffx.15826.1.S1_at--213--3131Chr06:23067067..23067091 (25 bp)
AATTTCTCACCGGACGATGCTACCA
LOC_Os06g38870
OsAffx.15826.1.S1_at--23--5771Chr06:23067079..23067103 (25 bp)
GACGATGCTACCATGGGTTGGAAAT
LOC_Os06g38870
Target Sequence 
ATTACGCGCGATAATCCAGCTCGTGCTGCTGGTTCTTGTGATCGGCAGTGGCATCCTCGTCGTGCCGGCGGCTGGGAGCA
CCGGCAAAACCGGCGGCACGGGAAGCAGTGGCAATGGTCGACCAACTGGTACGGGTGGTCCGTCTACCGCATCACCGTAC
AGGACATATGGCAGACGGGCTGAAATTTATTTTGATTTCAGCCGAATTTCTCACCGGACGATGCTACCATGGGTTGGAAA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis