Browse Element(s) Details


OsAffx.15837.1.S1_at

Description tigr:9634.m03747
TID=OsAffx.15837.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3922011/11hypothetical protein
LOC_Os03g280607/11transposon protein, putative, Mutator sub-class
LOC_Os05g261107/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39180NANA6+23257758..23263522retrotransposon protein, putative, unclassified
LOC_Os06g39190OsAffx.30294.1.S1_at4/116+23264599..23269781retrotransposon protein, putative, unclassified
LOC_Os06g39190OsAffx.5954.5.S1_x_at3/116+23264599..23269781retrotransposon protein, putative, unclassified
LOC_Os06g39200OsAffx.27021.1.S1_at10/116+23276563..23278020hypothetical protein
LOC_Os06g39210OsAffx.940.1.S1_x_at1/116+23278330..23281479transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g39220OsAffx.15837.1.S1_at11/116+23283633..23284301hypothetical protein
LOC_Os06g39230OsAffx.15838.1.S1_at11/116+23288527..23291318Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39230Os.47977.1.A1_at9/116+23288527..23291318Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39240Os.11046.1.S1_at11/116+23292261..23293076Helix-turn-helix family protein, expressed
LOC_Os06g39250OsAffx.5060.1.S1_at11/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.28003.2.S1_x_at8/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.28003.1.S1_at2/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.4453.1.S1_at2/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.30450.1.S1_at1/116+23295641..23299393hypothetical protein
LOC_Os06g39260Os.14592.1.S1_at11/116+23302674..23305969Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os06g39270NANA6+23309218..23310948Indole-3-acetate beta-glucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15837.1.S1_at--700--10172Chr05:15111254..15111278 (25 bp)
TATTTGGGCGAATCCCTTGTACGGG
LOC_Os05g26110
OsAffx.15837.1.S1_at--59--7593Chr05:15111270..15111292 (23 bp)
TTGTACGGGTTGCTTCCAAACCGCA
LOC_Os05g26110
OsAffx.15837.1.S1_at--1105--2613Chr05:15111400..15111420 (21 bp)
AACCGCATTGGTTTTCAGTCGATGT
LOC_Os05g26110
OsAffx.15837.1.S1_at--531--7713Chr05:15111423..15111447 (25 bp)
GGGTGCAACCCTATGCGACAGTAGA
LOC_Os05g26110
OsAffx.15837.1.S1_at--505--8233Chr05:15111479..15111503 (25 bp)
GGCACTGGGCATTGGGTAATCGATT
LOC_Os05g26110
OsAffx.15837.1.S1_at--619--3451Chr06:23283914..23283938 (25 bp)
CAGTCTCCCTCAGTGTGGTATTTTA
LOC_Os06g39220
OsAffx.15837.1.S1_at--276--753Chr05:15111656..15111680 (25 bp)
ATGTATGCAACCGAGGCCAGTTTCC
LOC_Os05g26110
OsAffx.15837.1.S1_at--83--4431Chr06:23283812..23283836 (25 bp)
GCCAGTTTCCACTTACTTGTAGCAG
LOC_Os06g39220
OsAffx.15837.1.S1_at--1061--10833Chr05:15111730..15111754 (25 bp)
TTGTGTGCATGAGCCCATTGCTATC
LOC_Os05g26110
OsAffx.15837.1.S1_at--750--5952Chr03:16109803..16109827 (25 bp)
GAGAACCCTTCCCACAATGATGGTT
LOC_Os03g28060
OsAffx.15837.1.S1_at--476--2691Chr06:23283688..23283712 (25 bp)
AAGCTGCTACTAATGATGGTTCTGC
LOC_Os06g39220
Target Sequence 
TATTTGGGCGAATCCCTTGTACGGGTTGCTTCCAAACCGCATTGGTTTTCAGTCGATGTTAGGGTGCAACCCTATGCGAC
AGTAGATGCTGATGGTAGGAAAATCATCAGTAAAGGAGGCACTGGGCATTGGGTAATCGATTCAGAGAGTTTTTCGTTTG
ATTTCCTAATGGAAAGTTTGAGGGTTGAGTTTAAGTGGGGCTCGAACCAGTCTCCCTCAGTGTGGTATTTTAACAAAAAT
TTGGGTGAGGATGTTAGGCTCATAGGGGACACTGATTTGCCAGATATTTTCGAGATGTATGCAACCGAGGCCAGTTTCCA
CTTACTTGTAGCAGTTCTTGAGGAAAGCATGGATGTTGCTTCTGTGTGTTGTGTGCATGAGCCCATTGCTATCATCCCAC
CTGAGAACCCTTCCCACAATGATGGTTCTAGACAAGCTGCTACTAATGATGGTTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis