Browse Element(s) Details


OsAffx.15958.1.S1_at

Description tigr:9634.m04561
TID=OsAffx.15958.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4687011/11Protease inhibitor/seed storage/LTP family protein
LOC_Os06g467809/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46799Os.53303.1.S1_at11/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799Os.5843.1.S1_at11/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799Os.23700.1.A1_at1/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46820Os.17675.1.S1_at11/116+28425962..28429243expressed protein
LOC_Os06g46830OsAffx.28140.1.S1_at11/116+28429780..28430406hypothetical protein
LOC_Os06g46840OsAffx.30517.1.S1_at3/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46840Os.44826.1.S1_at1/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46850OsAffx.25502.2.S1_at4/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46850Os.47130.4.A1_x_at1/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46860OsAffx.28141.1.S1_at10/116+28439984..28443176hypothetical protein
LOC_Os06g46860OsAffx.988.1.S1_at1/116+28439984..28443176hypothetical protein
LOC_Os06g46870OsAffx.15958.1.S1_at11/116+28447781..28448967Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46880OsAffx.15959.1.S1_s_at11/116+28451973..28455564Surp module family protein, expressed
LOC_Os06g46890Os.14747.1.S1_at11/116+28456955..28462486expressed protein
LOC_Os06g46900Os.11106.1.S1_at11/116+28462800..28465239phosphosulfolactate synthase-related protein, putative, expressed
LOC_Os06g46910Os.50189.1.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46910Os.50189.2.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46920Os.52555.1.S1_at11/116+28469176..28471150NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g46930Os.7589.1.S1_at11/116+28471589..2847378150S ribosomal protein L24, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15958.1.S1_at--842--10592Chr06:28405572..28405596 (25 bp)
TTCGGCTGGCTCTGGCTTCCGGTTC
LOC_Os06g46780
OsAffx.15958.1.S1_at--195--9072Chr06:28405780..28405804 (25 bp)
TGCTTGACGCCGCTGTTGTCGATGA
LOC_Os06g46780
OsAffx.15958.1.S1_at--430--5812Chr06:28405785..28405809 (25 bp)
GACGCCGCTGTTGTCGATGATGTCG
LOC_Os06g46780
OsAffx.15958.1.S1_at--989--7212Chr06:28405797..28405821 (25 bp)
GTCGATGATGTCGTGCGCGGACTAC
LOC_Os06g46780
OsAffx.15958.1.S1_at--776--2852Chr06:28405873..28405897 (25 bp)
AAGTCGCTGGTGAGCACGGCGCCCA
LOC_Os06g46780
OsAffx.15958.1.S1_at--1015--8272Chr06:28405912..28405936 (25 bp)
GGCATCAATGGCGACCTGAGCAAGT
LOC_Os06g46780
OsAffx.15958.1.S1_at--909--2952Chr06:28405918..28405942 (25 bp)
AATGGCGACCTGAGCAAGTTCCTCC
LOC_Os06g46780
OsAffx.15958.1.S1_at--590--2052Chr06:28406004..28406028 (25 bp)
ACTTCAGACGTTCTCCATGTGCAAC
LOC_Os06g46780
OsAffx.15958.1.S1_at--1027--1392Chr06:28406009..28406029 (21 bp)
AGACGTTCTCCATGTGCAACACGCC
LOC_Os06g46780
OsAffx.15958.1.S1_at--1028--9431Chr06:28447950..28447974 (25 bp)
TCGGTGCCTCCATTGATGCCTCAGA
LOC_Os06g46870
OsAffx.15958.1.S1_at--355--51Chr06:28447939..28447963 (25 bp)
ATTGATGCCTCAGAGCCCATCTGCT
LOC_Os06g46870
Target Sequence 
TTCGGCTGGCTCTGGCTTCCGGTTCCCGTTCCCGCTCCCGCTGCCGTTCCCTGCGCCCGCCTCGCCGGGCGGCGCTCCGC
CGTCGTCTGGGTCCGGCTTCCCGGCGTTCCCGTTCCCGTTCCCCAGCTCGCCGGTCTCGCCACCGTCTCAAGCATCACCC
GCCTCGCCGGCGGCACCGGCGCCGCCATCGCCGCCGCAGCCAAAGGAGTGCTTGACGCCGCTGTTGTCGATGATGTCGTG
CGCGGACTACCTGACGAACAGCAGCGCGCAGACGCCGCCGGGCACCTGCTGCGAGGGGTTCAAGTCGCTGGTGAGCACGG
CGCCCATCTGCCTGTGCCACGGCATCAATGGCGACCTGAGCAAGTTCCTCCCGCTCCCCGTCGACATGATGAAGATGATG
ACGCTCCCCAACACCTGCGGCGCCACGGTCCCACTTCAGACGTTCTCCATGTGCAACACGCCCTCGGTGCCTCCATTGAT
GCCTCAGAGCCCATCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis