Browse Element(s) Details


OsAffx.15968.1.S1_at

Description tigr:9634.m04603
TID=OsAffx.15968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 49130-47169
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4725011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47200Os.11393.1.S2_at11/116+28616449..28619312Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47200Os.11393.1.S1_at11/116+28616449..28619312Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47210Os.54309.1.S1_at11/116+28619995..28627008Peptidase family M3 containing protein, expressed
LOC_Os06g47220OsAffx.5134.1.S1_at10/116+28628473..28630394expressed protein
LOC_Os06g47220OsAffx.30891.1.S1_x_at2/116+28628473..28630394expressed protein
LOC_Os06g47230Os.12237.1.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47230Os.12237.2.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47240Os.57160.1.S1_at3/116+28641657..28641960hypothetical protein
LOC_Os06g47250OsAffx.15968.1.S1_at11/116+28643142..28647822expressed protein
LOC_Os06g47260OsAffx.15969.1.S1_at11/116+28650190..28651600Ras-related protein RHN1, putative, expressed
LOC_Os06g47270Os.50815.1.S1_at11/116+28651795..28653125Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g47280OsAffx.28146.1.S1_at11/116+28653840..28655981hypothetical protein
LOC_Os06g47290Os.24780.1.A1_a_at11/116+28657267..28661112Plant protein family protein, expressed
LOC_Os06g47300Os.27428.1.S1_at11/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47300OsAffx.13466.1.S1_at1/116+28669241..28673824RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15968.1.S1_at--205--7691Chr06:28643675..28643699 (25 bp)
GGGTCTAGACAACCTCATGGAGGCA
LOC_Os06g47250
OsAffx.15968.1.S1_at--42--1351Chr06:28643617..28643641 (25 bp)
AGAGAACTCCTAGTAGCCGGCCAAG
LOC_Os06g47250
OsAffx.15968.1.S1_at--172--2971Chr06:28643576..28643600 (25 bp)
AATGGAGCTTTGTACACCGAGGACT
LOC_Os06g47250
OsAffx.15968.1.S1_at--309--5711Chr06:28643555..28643579 (25 bp)
GACTACGATGGATTCATGCAGCGCC
LOC_Os06g47250
OsAffx.15968.1.S1_at--332--6351Chr06:28643363..28643387 (25 bp)
GATGCGGAAATCAATCCAGCTCCAA
LOC_Os06g47250
OsAffx.15968.1.S1_at--66--951Chr06:28643289..28643313 (25 bp)
AGGAAGAGCAATCTCACTGCCAGGG
LOC_Os06g47250
OsAffx.15968.1.S1_at--469--7611Chr06:28643266..28643290 (25 bp)
GGGAATCCGTCTGCCGCGATGAAGA
LOC_Os06g47250
OsAffx.15968.1.S1_at--835--5351Chr06:28643246..28643270 (25 bp)
GAAGATGTGAAGTTTCCTGCCCGGT
LOC_Os06g47250
OsAffx.15968.1.S1_at--255--4471Chr06:28643208..28643232 (25 bp)
GCCGGACTGTCCCAAAACTGTACAT
LOC_Os06g47250
OsAffx.15968.1.S1_at--173--2371Chr06:28643194..28643218 (25 bp)
AAACTGTACATGTGCACCCGAAAAT
LOC_Os06g47250
OsAffx.15968.1.S1_at--1039--5511Chr06:28643175..28643199 (25 bp)
GAAAATGCCTGACTTTGATGAGCTT
LOC_Os06g47250
Target Sequence 
GGGTCTAGACAACCTCATGGAGGCAAAGGAATGGATGATGTTAATGGAGAGAATGTTCAGAGAACTCCTAGTAGCCGGCC
AAGGCACTCAGGCAGGAGAAATGGAGCTTTGTACACCGAGGACTACGATGGATTCATGCAGCGCCATAAATCAGAAGAGG
ATGAGGCTGCAATTGACTTTGGTAATCTTTTACCCAGAACTGGAAATGGCCATAGGAGACACAAAAGCCGCAATACTGAT
GCGCGCAGTGGAGTTGATGAGGAGGAGAGAATGATGGATAAGCTTCTGAGGCACTACAGCAAGAAAGGTTTAGATGCGGA
AATCAATCCAGCTCCAACCAACAAAGCAGAAGAACAATCTGAGCAAAAGGGCTCCATGCATCCTCCAGGAAGAGCAATCT
CACTGCCAGGGGAATCCGTCTGCCGCGATGAAGATGTGAAGTTTCCTGCCCGGTCTACCTCACTGCAGCCGGACTGTCCC
AAAACTGTACATGTGCACCCGAAAATGCCTGACTTTGATGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis