Browse Element(s) Details


OsAffx.16128.1.S1_s_at

Description tigr:9635.m00612
TID=OsAffx.16128.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0672011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06670Os.7147.1.S1_at7/117+3249400..3253581F-box domain containing protein, expressed
LOC_Os07g06680Os.27550.1.S1_at10/117+3256608..3260416beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os07g06700OsAffx.22473.1.S1_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06700OsAffx.22473.1.S1_x_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06710OsAffx.16407.1.S1_x_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06710Os.7413.1.S1_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06720OsAffx.16128.1.S1_s_at11/117+3277338..3279613hypothetical protein
LOC_Os07g06730OsAffx.28310.1.S1_at11/117+3283482..3285727F-box domain containing protein
LOC_Os07g06730OsAffx.28310.2.S1_x_at10/117+3283482..3285727F-box domain containing protein
LOC_Os07g06740Os.12665.1.S1_at11/117+3286778..3291591Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g06750OsAffx.28312.1.S1_at6/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06750OsAffx.28314.1.S1_x_at1/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06760OsAffx.28312.2.S1_at11/117+3299802..3300365VQ motif family protein
LOC_Os07g06760OsAffx.28314.1.S1_x_at2/117+3299802..3300365VQ motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16128.1.S1_s_at--30--7671Chr07:3277625..3277649 (25 bp)
GGGATAAGTCCGGTGAGCCCGACAC
LOC_Os07g06720
OsAffx.16128.1.S1_s_at--669--2171Chr07:3277604..3277628 (25 bp)
ACACGGTGAGGGATAGGATACTGCT
LOC_Os07g06720
OsAffx.16128.1.S1_s_at--536--5891Chr07:3277578..3277602 (25 bp)
GAGCTCGAGCATGAGTTCCTTGAGG
LOC_Os07g06720
OsAffx.16128.1.S1_s_at--248--6691Chr07:3277564..3277588 (25 bp)
GTTCCTTGAGGTCTACACGACAAAA
LOC_Os07g06720
OsAffx.16128.1.S1_s_at--347--1051Chr07:3277532..3277556 (25 bp)
AGGTGAACCAGAGCCGGGTGCAGCT
LOC_Os07g06720
OsAffx.16128.1.S1_s_at--290--5051Chr07:3277483..3277507 (25 bp)
GCAGAGCTTGCTGACATCTGTTCGT
LOC_Os07g06720
OsAffx.16128.1.S1_s_at--54--5671Chr07:3277471..3277495 (25 bp)
GACATCTGTTCGTCCATGGGTGAAA
LOC_Os07g06720
OsAffx.16128.1.S1_s_at--1097--9451Chr07:3277467..3277491 (25 bp)
TCTGTTCGTCCATGGGTGAAACCGC
LOC_Os07g06720
OsAffx.16128.1.S1_s_at--1120--7751Chr07:3277453..3277477 (25 bp)
GGTGAAACCGCCCATGCACGTTAGA
LOC_Os07g06720
OsAffx.16128.1.S1_s_at--1159--4531Chr07:3277444..3277468 (25 bp)
GCCCATGCACGTTAGACTGGTTTGT
LOC_Os07g06720
OsAffx.16128.1.S1_s_at--565--5091Chr07:3277438..3277462 (25 bp)
GCACGTTAGACTGGTTTGTTTCTAC
LOC_Os07g06720
Target Sequence 
GGGATAAGTCCGGTGAGCCCGACACGGTGAGGGATAGGATACTGCTGGAGCTCGAGCATGAGTTCCTTGAGGTCTACACG
ACAAAAATTGACAAGGTGAACCAGAGCCGGGTGCAGCTGAGGCAGGCCATTGCCGAGGCCGAGCAGAGCTTGCTGACATC
TGTTCGTCCATGGGTGAAACCGCCCATGCACGTTAGACTGGTTTGTTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16128.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis