Browse Element(s) Details


OsAffx.16136.1.S1_at

Description tigr:9635.m00697
TID=OsAffx.16136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0750011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed
LOC_Os07g07500OsAffx.16136.1.S1_at11/117+3731691..3733640hypothetical protein
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07530Os.54674.1.S1_at11/117+3752692..3756154expressed protein
LOC_Os07g07530Os.29072.1.S1_at3/117+3752692..3756154expressed protein
LOC_Os07g07540Os.2422.1.S1_a_at11/117+3758223..3760268SHOOT1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16136.1.S1_at--347--1691Chr07:3733528..3733552 (25 bp)
AGCCATCGCAACATGTGAGAGCCAT
LOC_Os07g07500
OsAffx.16136.1.S1_at--504--6371Chr07:3733496..3733520 (25 bp)
GATCCGACCGTCGACGAGCGTGAGA
LOC_Os07g07500
OsAffx.16136.1.S1_at--542--6151Chr07:3733473..3733497 (25 bp)
GAGGTTCGAAGCTATGGATGTCATC
LOC_Os07g07500
OsAffx.16136.1.S1_at--787--7991Chr07:3733458..3733482 (25 bp)
GGATGTCATCTTCAAGCTAGTATTG
LOC_Os07g07500
OsAffx.16136.1.S1_at--192--10231Chr07:3733148..3733462 (25 bp)
TATTGACGCTATTTGTTACAGGTGT
LOC_Os07g07500
OsAffx.16136.1.S1_at--209--9531Chr07:3733102..3733126 (25 bp)
TCTCATTGTGGTGGCTTTCCTAAAT
LOC_Os07g07500
OsAffx.16136.1.S1_at--673--3811Chr07:3732773..3732797 (25 bp)
CTCCTCAGGTCCGTCTATTGATGAC
LOC_Os07g07500
OsAffx.16136.1.S1_at--696--691Chr07:3732753..3732777 (25 bp)
ATGACCATGAGCGAGCTTGGCAATC
LOC_Os07g07500
OsAffx.16136.1.S1_at--552--2131Chr07:3732726..3732750 (25 bp)
ACAGGGCCCTCAAATTGCAGCACGA
LOC_Os07g07500
OsAffx.16136.1.S1_at--1118--51Chr07:3731850..3731874 (25 bp)
ATTGCAGTGTGCTCATAGTATTTTG
LOC_Os07g07500
OsAffx.16136.1.S1_at--516--6111Chr07:3731826..3731850 (25 bp)
GAGTGCCAAGCATTCATCAGGCCAG
LOC_Os07g07500
Target Sequence 
AGCCATCGCAACATGTGAGAGCCATGCCGGGCGATCCGACCGTCGACGAGCGTGAGAGGTTCGAAGCTATGGATGTCATC
TTCAAGCTAGTATTGACGCTATTTGTTACAGGTGTATCGTTTGGGGGCGCGGTCGCTCTCATTGTGGTGGCTTTCCTAAA
TGCGGACGAGAGGTTTCGTGGGACAAAGCTTTTAGAACGAAAGAGAGGAGCGCCCTCCTCAGGTCCGTCTATTGATGACC
ATGAGCGAGCTTGGCAATCGCACAGGGCCCTCAAATTGCAGCACGAGCAACTGTATAATTTATTAGAGATACTACTAGCA
TTGCAGTGTGCTCATAGTATTTTGAGTGCCAAGCATTCATCAGGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis