Browse Element(s) Details


OsAffx.16234.2.S1_x_at

Description tigr:9632.m00599
TID=OsAffx.16234.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g068607/11Cationic peroxidase 2 precursor, putative
LOC_Os05g420001/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06820NANA4+3580369..3584284retrotransposon protein, putative, unclassified
LOC_Os04g06830OsAffx.25897.1.S1_at11/114+3586491..3587292hypothetical protein
LOC_Os04g06840OsAffx.25898.1.S1_at11/114+3594503..3595747hypothetical protein
LOC_Os04g06850Os.54172.1.S1_at9/114+3596188..3600794expressed protein
LOC_Os04g06860OsAffx.16234.2.S1_x_at7/114+3604492..3605117Cationic peroxidase 2 precursor, putative
LOC_Os04g06870OsAffx.25036.1.S1_at6/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.25036.2.S1_at4/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.26548.1.S1_at3/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870Os.39298.1.S1_at1/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06879NANA4+3615929..3616475hypothetical protein
LOC_Os04g06890OsAffx.25899.1.S1_at11/114+3618375..3619295hypothetical protein
LOC_Os04g06900OsAffx.13699.1.S1_at11/114+3622315..3625192expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16234.2.S1_x_at--828--8071Chr04:3605212..3605236 (25 bp)
GGAGCAGCAACGGTCGGAAGCGACG
NONE
OsAffx.16234.2.S1_x_at--1116--5851Chr04:3605165..3605189 (25 bp)
GAGCCGGTCGGGAGTGGCAGCGGCC
NONE
OsAffx.16234.2.S1_x_at--1120--8392Chr05:24504169..24504202 (25 bp)
GGCGCGGCGCCGTTGAGACAGTTTG
LOC_Os05g42000
OsAffx.16234.2.S1_x_at--725--10771Chr04:3605113..3605137 (25 bp)
TTGAGACAGTTTGCTGCCTCATGTC
NONE
OsAffx.16234.2.S1_x_at--642--7971Chr04:3604880..3604904 (25 bp)
GGATGCATTACCACGACTGCTTTGT
LOC_Os04g06860
OsAffx.16234.2.S1_x_at--975--7711Chr04:3604770..3604794 (25 bp)
GGGTGTGACGTATCGATTATGCTGA
LOC_Os04g06860
OsAffx.16234.2.S1_x_at--656--3252Chr07:7328091..7328115 (25 bp)
CAACCGGAGCATGCGAGGCTACGAC
NONE
OsAffx.16234.2.S1_x_at--1129--592Chr07:7328081..7328105 (25 bp)
ATGCGAGGCTACGACGCCATCAATC
NONE
OsAffx.16234.2.S1_x_at--1098--5791Chr04:3604686..3604710 (25 bp)
GACGCCATCAATCAGATCAAGGAGA
LOC_Os04g06860
OsAffx.16234.2.S1_x_at--934--8532Chr07:7328041..7328065 (25 bp)
TGGAGAGCATCTGCCCGCTCACCGC
NONE
OsAffx.16234.2.S1_x_at--153--4711Chr04:3604601..3604625 (25 bp)
GCTCCTCCGACCAAAAGAAAGGCCG
LOC_Os04g06860
Target Sequence 
GGAGCAGCAACGGTCGGAAGCGACGGCGGTGGCTATGGGGAGTGGCGGAGCCGGTCGGGAGTGGCAGCGGCCGTGGCGGT
GGGGAGCGGCGCGGCGCCGTTGAGACAGTTTGCTGCCTCATGTCCCGGGAGCTGGAGCTCCTGCTGTTTTTGCTGGCCCT
ACGGGTGGGGTTCTACCATGCCAAGTGCCCTGTCGCGGAGGACGTCGTGCTGGGCGAGATGAGGATGATCCTCGAGGAGG
ATCCCACGCTCGCGCCGTCTCTGCACCGGATGCATTACCACGACTGCTTTGTCCAGGGGTGTGACGTATCGATTATGCTG
AGGTCGAGGAGCGGAAAGGGGGAGAGGGACGCGACGCCCAACCGGAGCATGCGAGGCTACGACGCCATCAATCAGATCAA
GGAGAGGCTGGAGAGCATCTGCCCGCTCACCGCCGCTCCCCACCGCCGTCGTCCCGACCGCCGCCGCTCCTCCGACCAAA
AGAAAGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16234.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis