Browse Element(s) Details


OsAffx.16467.1.S1_at

Description tigr:9635.m02824
TID=OsAffx.16467.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g342109/11hypothetical protein
LOC_Os04g301209/11hypothetical protein
LOC_Os07g153109/11hypothetical protein
LOC_Os09g024809/11hypothetical protein
LOC_Os10g239509/11hypothetical protein
LOC_Os05g350909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g276709/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g076209/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g172109/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g345009/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g237909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g179809/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g313809/11hypothetical protein
LOC_Os12g269909/11hypothetical protein
LOC_Os01g325508/11hypothetical protein
LOC_Os08g269307/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g284307/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g351207/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g512807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g041407/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g578207/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g290307/11hypothetical protein
LOC_Os03g138907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g210807/11retrotransposon protein, putative, unclassified
LOC_Os12g255307/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g110807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g205707/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g192007/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g342907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g231906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g040006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g377366/11hypothetical protein
LOC_Os04g257006/11hypothetical protein
LOC_Os11g230206/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g213006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g135606/11hypothetical protein
LOC_Os10g187106/11hypothetical protein
LOC_Os09g099006/11hypothetical protein
LOC_Os07g322206/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g191705/11hypothetical protein
LOC_Os12g406005/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g454805/11hypothetical protein
LOC_Os04g249404/11hypothetical protein
LOC_Os05g104404/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g200604/11hypothetical protein
LOC_Os06g294104/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g326744/11hypothetical protein
LOC_Os03g303904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g144904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g330204/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g261903/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g279903/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g221803/11hypothetical protein
LOC_Os09g166003/11hypothetical protein
LOC_Os09g133003/11hypothetical protein
LOC_Os04g084803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g141203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g261003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g185203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g195803/11hypothetical protein
LOC_Os06g228901/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34180NANA2+20435190..20441348transposon protein, putative, unclassified
LOC_Os02g34190Os.9329.1.S1_at11/112+20444676..20448737hypothetical protein
LOC_Os02g34190OsAffx.30061.3.S1_at9/112+20444676..20448737hypothetical protein
LOC_Os02g34190OsAffx.30061.2.S1_at1/112+20444676..20448737hypothetical protein
LOC_Os02g34200Os.26886.1.S1_x_at8/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34200Os.26886.3.S1_x_at4/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34200OsAffx.16244.1.S1_x_at1/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34210OsAffx.16467.1.S1_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.2.S1_s_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.6.S1_s_at8/112+20460825..20462776hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_x_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34240OsAffx.12345.1.S1_at9/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34240OsAffx.9423.1.S1_x_at1/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34250OsAffx.2855.1.S1_at11/112+20483394..20484110expressed protein
LOC_Os02g34260Os.55316.1.S1_at5/112+20485245..20486000AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16467.1.S1_at--639--4591NONE
GCGAACTCACCGCACGATGGAAAGC
NONE
OsAffx.16467.1.S1_at--554--4111NONE
CGAACTCACCGCACGATGGAAAGCC
NONE
OsAffx.16467.1.S1_at--299--58344Chr12:13516542..13516719 (25 bp)
GACCGTCAAGGAATGTGCCCATTGG
LOC_Os12g23790
OsAffx.16467.1.S1_at--684--17739Chr12:13516543..13516720 (25 bp)
ACCGTCAAGGAATGTGCCCATTGGA
LOC_Os12g23790
OsAffx.16467.1.S1_at--864--42327Chr12:13516544..13516721 (25 bp)
CCGTCAAGGAATGTGCCCATTGGAT
LOC_Os12g23790
OsAffx.16467.1.S1_at--439--40135Chr12:13516545..13516722 (25 bp)
CGTCAAGGAATGTGCCCATTGGATC
LOC_Os12g23790
OsAffx.16467.1.S1_at--872--70750Chr12:13516546..13516723 (25 bp)
GTCAAGGAATGTGCCCATTGGATCC
LOC_Os12g23790
OsAffx.16467.1.S1_at--402--97353Chr12:13516547..13516724 (25 bp)
TCAAGGAATGTGCCCATTGGATCCT
LOC_Os12g23790
OsAffx.16467.1.S1_at--438--43154Chr12:13516722..13516777 (25 bp)
CCTTCTGGTCATAACTCCAGAATTG
LOC_Os12g23790
OsAffx.16467.1.S1_at--446--36555Chr12:13516723..13516778 (25 bp)
CTTCTGGTCATAACTCCAGAATTGA
LOC_Os12g23790
OsAffx.16467.1.S1_at--15--106156Chr12:13516724..13516779 (25 bp)
TTCTGGTCATAACTCCAGAATTGAT
LOC_Os12g23790
Target Sequence 
GCGAACTCACCGCACGATGGAAAGCCATTCCTTGGTCCAACAAATTATGTCGTGGTCGACTTCAAGGATCTTTTCGACCT
CTACAGGCTCCGAGCGGTGGACACAAGCCTCCTTAAGTGCTACTCCTTGTTAAGTTGGCAATGGTGTCAGAAGCATGCAC
CGGAAGTTGTCTTCCTTAATCCACAAGTGGTCACTGTCACAAATCTCCAGAATGACCGTCAAGGAATGTGCCCATTGGAT
CCTTCTGGTCATAACTCCAGAATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis