Browse Element(s) Details


OsAffx.16965.1.S1_x_at

Description tigr:9636.m01254
TID=OsAffx.16965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1278010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12730OsAffx.16962.1.S1_at11/118+7533790..7541820Cycloartenol synthase, putative, expressed
LOC_Os08g12740OsAffx.16963.1.S1_at11/118+7542299..7544988NB-ARC domain containing protein, expressed
LOC_Os08g12750Os.12331.1.S1_at11/118+7547431..7552419serine/threonine protein kinase, putative, expressed
LOC_Os08g12760Os.7188.1.S1_at11/118+7552756..7556829YT521-B-like family protein, expressed
LOC_Os08g12780Os.25324.2.S1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780Os.25324.1.A1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780OsAffx.16965.1.S1_x_at10/118+7562192..7567953expressed protein
LOC_Os08g12790OsAffx.24242.4.S1_x_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.4.S1_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.5.S1_x_at1/118+7570564..7571562hypothetical protein
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os08g12810OsAffx.5796.1.S1_at9/118+7582705..7583889hypothetical protein
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16965.1.S1_x_at--1034--5691Chr08:7565862..7565886 (25 bp)
GACTATGTTCTGATGCCATTTTTGG
LOC_Os08g12780
OsAffx.16965.1.S1_x_at--366--1471Chr08:7565589..7565613 (25 bp)
AGAAGGTACCACTTGCTGCTGAGCT
LOC_Os08g12780
OsAffx.16965.1.S1_x_at--50--3071Chr08:7565475..7565499 (25 bp)
AATCTCCTCCACTTTCTGATGATGA
LOC_Os08g12780
OsAffx.16965.1.S1_x_at--781--4091Chr08:7565245..7565269 (25 bp)
CGAAAAGCGTTTGCAAATATCTGGT
LOC_Os08g12780
OsAffx.16965.1.S1_x_at--903--192Chr01:10169546..10169571 (23 bp)
ATTTCCCTATTCCTTCTTATGTACT
NONE
OsAffx.16965.1.S1_x_at--960--5631Chr08:7564626..7564650 (25 bp)
GACAGTGGGAAAGCATTCCTTATAA
LOC_Os08g12780
OsAffx.16965.1.S1_x_at--155--5651NONE
GACATCCTTCTAGGGTACCATTCAG
NONE
OsAffx.16965.1.S1_x_at--146--1171Chr08:7563693..7563717 (25 bp)
AGTCAGGTTGGCATTCTTTGGTAGA
LOC_Os08g12780
OsAffx.16965.1.S1_x_at--860--1451Chr08:7563671..7563695 (25 bp)
AGAAGTCATTCTCGAGCACTACGGC
LOC_Os08g12780
OsAffx.16965.1.S1_x_at--304--5191Chr08:7563628..7563652 (25 bp)
GCAATCACCTTCTTTGTTTGTCTGG
LOC_Os08g12780
OsAffx.16965.1.S1_x_at--105--6711Chr08:7563604..7563628 (25 bp)
GTTCCTGTTGCCTTGGATGTATTTA
LOC_Os08g12780
Target Sequence 
GACTATGTTCTGATGCCATTTTTGGAAAGGTACGTCCAGAAGGTACCACTTGCTGCTGAGCTGCTTGATGTAAGGCGCAG
CCAGAAACTCCTGATGGTAAAGGACATAAATACTGAGAAAGCAAGATATCGTTTTGAAGTAGAGATTGGTAAATCTCCTC
CACTTTCTGATGATGAGCTCTGGATAGAGTTGAGAGATGAATGGAGATTAGAAAACCGAAAAGCGTTTGCAAATATCTGG
TCTGACATGGTTTATGGAATTTCCCTATTCCTTCTTATGTACTTCAACCAGAGTAAAGTTGCGATGCTGAAATTCACAGG
ATATAAGTTACTAAATAATATTTCAGACAGTGGGAAAGCATTCCTTATAATTCTAGTTTCAGACATCCTTCTAGGGTACC
ATTCAGAGTCAGGTTGGCATTCTTTGGTAGAAGTCATTCTCGAGCACTACGGCCTTGAAGCCGATCAAGCTGCAATCACC
TTCTTTGTTTGTCTGGTTCCTGTTGCCTTGGATGTATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16965.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis