Browse Element(s) Details


OsAffx.16969.1.S1_at

Description tigr:9636.m01285
TID=OsAffx.16969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1304011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13010OsAffx.29172.1.S1_at10/118+7717968..7720038hypothetical protein
LOC_Os08g13010Os.8747.3.S1_x_at2/118+7717968..7720038hypothetical protein
LOC_Os08g13020OsAffx.16968.1.S1_at11/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13020Os.72.1.S1_x_at1/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13030OsAffx.29173.1.S1_at11/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13030OsAffx.29173.2.S1_at2/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13040OsAffx.16969.1.S1_at11/118+7738035..7738394hypothetical protein
LOC_Os08g13050OsAffx.16970.1.S1_at11/118+7739762..7740521hypothetical protein
LOC_Os08g13060Os.53261.1.S1_at11/118+7750323..7751826BTB/POZ domain containing protein, expressed
LOC_Os08g13070Os.12333.1.S1_at11/118+7754349..7755879BTB/POZ domain containing protein, expressed
LOC_Os08g13080OsAffx.5798.1.S1_at11/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13080OsAffx.20993.1.S1_at1/118+7758239..7768513retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16969.1.S1_at--636--6191Chr08:7738331..7738355 (25 bp)
GAGGAAGACCAAGACAGTGCTGAAT
LOC_Os08g13040
OsAffx.16969.1.S1_at--267--2091Chr08:7738288..7738312 (25 bp)
ACATCAACATTATCGGAGACCTTAG
LOC_Os08g13040
OsAffx.16969.1.S1_at--3--5011Chr08:7738240..7738264 (25 bp)
GCATGTGGACATTTGGTAGCGTTGA
LOC_Os08g13040
OsAffx.16969.1.S1_at--26--3591Chr08:7738231..7738255 (25 bp)
CATTTGGTAGCGTTGACTTGCTGGG
LOC_Os08g13040
OsAffx.16969.1.S1_at--450--3211Chr08:7738194..7738218 (25 bp)
CAAGGAGGTCATCTACTTGATGGAT
LOC_Os08g13040
OsAffx.16969.1.S1_at--1004--171Chr08:7738171..7738195 (25 bp)
ATTTAGATGAGGTGGTAGCTTACCA
LOC_Os08g13040
OsAffx.16969.1.S1_at--97--6951Chr08:7738157..7738181 (25 bp)
GTAGCTTACCATCTGAGGAGCTCCA
LOC_Os08g13040
OsAffx.16969.1.S1_at--75--6191Chr08:7738143..7738167 (25 bp)
GAGGAGCTCCAAGGTTCAGTACTTA
LOC_Os08g13040
OsAffx.16969.1.S1_at--1148--3431Chr08:7738127..7738151 (25 bp)
CAGTACTTAGGTTGTAATCGCTTAA
LOC_Os08g13040
OsAffx.16969.1.S1_at--1129--5951Chr08:7738082..7738106 (25 bp)
GAGAAGTCATTCTTTTACACCCCTT
LOC_Os08g13040
OsAffx.16969.1.S1_at--1055--9851Chr08:7738067..7738091 (25 bp)
TACACCCCTTGCTTCGTCGATTTGA
LOC_Os08g13040
Target Sequence 
GAGGAAGACCAAGACAGTGCTGAATGGAACTCTGATGATGATAACATCAACATTATCGGAGACCTTAGCAAGAACAAAGA
AGAGGAGATGAGCATGTGGACATTTGGTAGCGTTGACTTGCTGGGGTTTCATCCATACAAGGAGGTCATCTACTTGATGG
ATTTAGATGAGGTGGTAGCTTACCATCTGAGGAGCTCCAAGGTTCAGTACTTAGGTTGTAATCGCTTAAATGAGTACAAT
AGGGGCATGGAGAAGTCATTCTTTTACACCCCTTGCTTCGTCGATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis