Browse Element(s) Details


OsAffx.16970.1.S1_at

Description tigr:9636.m01286
TID=OsAffx.16970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1305011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13010OsAffx.29172.1.S1_at10/118+7717968..7720038hypothetical protein
LOC_Os08g13010Os.8747.3.S1_x_at2/118+7717968..7720038hypothetical protein
LOC_Os08g13020OsAffx.16968.1.S1_at11/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13020Os.72.1.S1_x_at1/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13030OsAffx.29173.1.S1_at11/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13030OsAffx.29173.2.S1_at2/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13040OsAffx.16969.1.S1_at11/118+7738035..7738394hypothetical protein
LOC_Os08g13050OsAffx.16970.1.S1_at11/118+7739762..7740521hypothetical protein
LOC_Os08g13060Os.53261.1.S1_at11/118+7750323..7751826BTB/POZ domain containing protein, expressed
LOC_Os08g13070Os.12333.1.S1_at11/118+7754349..7755879BTB/POZ domain containing protein, expressed
LOC_Os08g13080OsAffx.5798.1.S1_at11/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13080OsAffx.20993.1.S1_at1/118+7758239..7768513retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16970.1.S1_at--806--10171Chr08:7740347..7740371 (25 bp)
TATAAGCTATTTGTCTGCAACCCCG
LOC_Os08g13050
OsAffx.16970.1.S1_at--357--1551Chr08:7740304..7740328 (25 bp)
AGCTTCCACCGTTCACAGAATATGA
LOC_Os08g13050
OsAffx.16970.1.S1_at--1125--631Chr08:7740273..7740297 (25 bp)
ATGCATTAGTGCTGAGTACCTCGTC
LOC_Os08g13050
OsAffx.16970.1.S1_at--502--2031Chr08:7740226..7740250 (25 bp)
ACTATGAGGTGTTCCTGATCCCTGA
LOC_Os08g13050
OsAffx.16970.1.S1_at--315--6532Chr12:23775200..23775220 (21 bp)
GATTTGCCTGAAATTCCTACCAAGA
NONE
OsAffx.16970.1.S1_at--278--3311Chr08:7740116..7740140 (25 bp)
CACACATTGTGGGTATTCTCGTCGA
LOC_Os08g13050
OsAffx.16970.1.S1_at--682--2931Chr08:7740071..7740095 (25 bp)
AAGGCTTTTCTCCATGAAGGCCACG
LOC_Os08g13050
OsAffx.16970.1.S1_at--705--6991Chr08:7739961..7739985 (25 bp)
GTACTGGAATGGTGCACTCTACGTG
LOC_Os08g13050
OsAffx.16970.1.S1_at--768--8171Chr08:7739859..7739883 (25 bp)
GGAACCCTTGGCATGACAGTTTTAG
LOC_Os08g13050
OsAffx.16970.1.S1_at--322--1691Chr08:7739836..7739860 (25 bp)
AGCCTATTTTTGTCACCTTCAACAT
LOC_Os08g13050
OsAffx.16970.1.S1_at--9--8871Chr08:7739792..7739816 (25 bp)
TAGTGGAGAACTGATCTTTTCCCGT
LOC_Os08g13050
Target Sequence 
TATAAGCTATTTGTCTGCAACCCCGCGACGCATCGATGGGTCCAGCTTCCACCGTTCACAGAATATGATAGTCTATGCAT
TAGTGCTGAGTACCTCGTCTTCGACCCTGCAGAGTCTCTGCACTATGAGGTGTTCCTGATCCCTGATTTGCCTGAAATTC
CTACCAAGAAGAAGTGCCACAAAGGTCCACTCGTGGGTAAGGACGCTACAGCGGAATGGCCACCGTCTGTGCACACATTG
TGGGTATTCTCGTCGAGGACTGGGAGGTGGGAGGATAAGGCTTTTCTCCATGAAGGCCACGCCACCAACATGGCAGGGAC
ATCATTAGAGGTGCTGTTGGATTCACCAGACATGATGTCTTGGGGACCGCGATTTATACGTGCGGAGTACTGGAATGGTG
CACTCTACGTGCACTTCCAAGCAAGGAACCCTTGGCATGACAGTTTTAGCCTATTTTTGTCACCTTCAACATTAGTGAAT
AGAGCATTCACTAGTGGAGAACTGATCTTTTCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis