Browse Element(s) Details


OsAffx.17435.1.S1_s_at

Description gb:NM_188999.1
DB_XREF= gi:34905081
GEN=P0686C03.24
TID=OsAffx.17435.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative dihydroflavonol 4-reductase (P0686C03.24), mRNA.
PROD=putative dihydroflavonol 4-reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4044011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40390OsAffx.29608.4.S1_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.1.S1_s_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.2.S1_s_at1/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40410Os.5392.1.S1_at11/118+25442277..25444214ACT domain-containing protein, putative
LOC_Os08g40420Os.9673.1.S1_at11/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40420Os.28438.3.S1_at10/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40430Os.15707.1.S1_at11/118+25456144..25457751mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440OsAffx.17435.1.S1_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440OsAffx.17435.1.S1_s_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40450Os.18951.1.S1_at11/118+25460280..25464101UvrB/uvrC motif family protein, expressed
LOC_Os08g40460OsAffx.29609.2.S1_x_at11/118+25466936..25468292BTB/POZ domain containing protein
LOC_Os08g40470OsAffx.20858.3.S1_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.4.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.3.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.1.S1_x_at7/118+25470175..25474196hypothetical protein
LOC_Os08g40480Os.11575.4.S1_x_at11/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40480Os.11575.3.S1_x_at9/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40490OsAffx.21997.2.S1_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40490OsAffx.21997.3.S1_x_at11/118+25477503..25483169BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17435.1.S1_s_at--799--2791Chr08:25459501..25459525 (25 bp)
AAGATGAAGCTGATCTGCCACCCAA
LOC_Os08g40440
OsAffx.17435.1.S1_s_at--97--9211Chr08:25459486..25459510 (25 bp)
TGCCACCCAACGTGTTGCTGGATGA
LOC_Os08g40440
OsAffx.17435.1.S1_s_at--88--5911Chr08:25459452..25459476 (25 bp)
GAGCTCCATGGAGTTCTGCGAGAGT
LOC_Os08g40440
OsAffx.17435.1.S1_s_at--597--811Chr08:25459336..25459360 (25 bp)
ATGGTACGCCATTGCCAAGACACTT
LOC_Os08g40440
OsAffx.17435.1.S1_s_at--763--2631Chr08:25459249..25459273 (25 bp)
AACCTTCGTGGTTGGACCCAATCTG
LOC_Os08g40440
OsAffx.17435.1.S1_s_at--305--8111Chr08:25459236..25459260 (25 bp)
GGACCCAATCTGTCTCATGAATTAA
LOC_Os08g40440
OsAffx.17435.1.S1_s_at--523--8831Chr08:25459219..25459243 (25 bp)
TGAATTAAGTCCCACTACCACCGAT
LOC_Os08g40440
OsAffx.17435.1.S1_s_at--332--7251Chr08:25459198..25459218 (21 bp)
GTCCTCGGCCTATTCCAAGGTGAGA
LOC_Os08g40440
OsAffx.17435.1.S1_s_at--145--1851Chr08:25458992..25459016 (25 bp)
ACGAAGTTCACCATGTACGGGAGGA
LOC_Os08g40440
OsAffx.17435.1.S1_s_at--605--7691Chr08:25458965..25458989 (25 bp)
GGGTACGTCCACATCGACGATGTCG
LOC_Os08g40440
OsAffx.17435.1.S1_s_at--4--1511Chr08:25458680..25458704 (25 bp)
AGCAGACTTATGGTTTCAGCACGGC
LOC_Os08g40440
Target Sequence 
AAGATGAAGCTGATCTGCCACCCAACGTGTTGCTGGATGAGACATCATGGAGCTCCATGGAGTTCTGCGAGAGTCTCCAG
ATATGGTACGCCATTGCCAAGACACTTGCAGAGAAGGCAGCCTGGGAGTTCGCCAAGGAGAACGGCATCGACCTTGTGGC
TGTTCTTCCAACCTTCGTGGTTGGACCCAATCTGTCTCATGAATTAAGTCCCACTACCACCGATGTCCTCGGCCTATTCC
AAGGTGAGACAACGAAGTTCACCATGTACGGGAGGATGGGGTACGTCCACATCGACGATGTCGCGAGCTGCCACATCCTG
CTCTACGAGACACCCCGTGCAGCCGGGAGGTACATCTGCAACTCGGCTGTCCTGGACGTCAACGAACTGGTCACCTTGCT
CGCTAGGCGATTCCCTTCGTACCCCATCCCAAAGAGTTTGCCGTGCGTTTACGGGGAGCAGACTTATGGTTTCAGCACGG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17435.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis