Browse Element(s) Details


OsAffx.17440.1.S1_at

Description tigr:9636.m04116
TID=OsAffx.17440.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161553 receptor protein kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4065011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40620Os.8803.1.S1_at11/118+25579971..25584766RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g40630Os.23927.1.S1_at11/118+25586637..25589064mTERF family protein, expressed
LOC_Os08g40640OsAffx.21990.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_x_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21992.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640Os.46785.2.S1_x_at5/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_x_at2/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.30226.2.S1_x_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40650OsAffx.17440.1.S1_at11/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650Os.45902.1.A1_x_at2/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.22442.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.727.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40660Os.53180.1.S1_at11/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.2.S1_x_at7/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.3.S1_x_at6/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.27088.1.A1_x_at4/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40670NANA8+25619077..25620483Zinc knuckle family protein
LOC_Os08g40680Os.4867.1.S1_at11/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40680OsAffx.17441.1.S1_at2/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40690Os.4681.1.S1_at11/118+25629614..25630980Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os08g40700OsAffx.17442.1.S1_at11/118+25632130..25633661expressed protein
LOC_Os08g40710Os.49985.1.S1_at11/118+25634719..25636039retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17440.1.S1_at--1023--2531Chr08:25609395..25609419 (25 bp)
AACTCAAGCTCATCGCAGATAGTTT
LOC_Os08g40650
OsAffx.17440.1.S1_at--134--7251Chr08:25609449..25609473 (25 bp)
GTCCTGTATACCTTGGCTATCTAGA
LOC_Os08g40650
OsAffx.17440.1.S1_at--1009--8451Chr08:25609539..25609716 (25 bp)
TGGCTGAGGCTCAGCACTTAGCCAG
LOC_Os08g40650
OsAffx.17440.1.S1_at--549--2051Chr08:25609707..25609731 (25 bp)
ACTTAGCCAGGGTCCATCACAGAAA
LOC_Os08g40650
OsAffx.17440.1.S1_at--837--8171Chr08:25609802..25609826 (25 bp)
GGAAGCCTAGCAGACCACTTGAGAG
LOC_Os08g40650
OsAffx.17440.1.S1_at--1096--2731Chr08:25609917..25609941 (25 bp)
AAGAAGATCTTCACACTGAACCCCT
LOC_Os08g40650
OsAffx.17440.1.S1_at--267--9691Chr08:25609941..25609965 (25 bp)
TCACTTGGTTGCAACGCCTTAACAT
LOC_Os08g40650
OsAffx.17440.1.S1_at--1161--3651Chr08:25609958..25609982 (25 bp)
CTTAACATTGCGTTGGACTCTGCCA
LOC_Os08g40650
OsAffx.17440.1.S1_at--1094--3291Chr08:25610206..25610230 (25 bp)
CACAACATCCTTCTTACTGCAAATT
LOC_Os08g40650
OsAffx.17440.1.S1_at--596--6531Chr08:25610248..25610272 (25 bp)
GATTTCGGCCTGACAAGGGCTTTCA
LOC_Os08g40650
OsAffx.17440.1.S1_at--337--7391Chr08:25610276..25610300 (25 bp)
GTGAGACGAACACACACTCTACAAC
LOC_Os08g40650
Target Sequence 
AACTCAAGCTCATCGCAGATAGTTTCAAAACCATAATTGGAAGGGGTGGGTTTGGTCCTGTATACCTTGGCTATCTAGAG
AATGGAACTCCCGTTGCTGTGAAGATGAGATCACAAACATCTAATCAAGGGAAAACAGAGTTTTTGGCTGAGGCTCAGCA
CTTAGCCAGGGTCCATCACAGAAACCTGGTGTCATTAATAGGCTATTGCAACGATAAGAAACATCTAGCCCTTGTGTATG
AGTACATGGATGGGGGAAGCCTAGCAGACCACTTGAGAGGTCAAGAAGATCTTCACACTGAACCCCTCACTTGGTTGCAA
CGCCTTAACATTGCGTTGGACTCTGCCAATGGACTGGAATACCTGCACAGGTCCTGCAGTCCACCATTGATCCATAGAGA
TGTGAAGGCCCACAACATCCTTCTTACTGCAAATTTCAAGGCAAAGATTTCAGATTTCGGCCTGACAAGGGCTTTCAGCA
GTGAGACGAACACACACTCTACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis