Browse Element(s) Details


OsAffx.17656.1.S1_at

Description tigr:9637.m00926
TID=OsAffx.17656.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1208011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12050Os.46557.2.S1_x_at8/119+6802261..6805757transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12050Os.46557.1.S1_x_at6/119+6802261..6805757transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12050Os.56073.1.S1_at4/119+6802261..6805757transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12050Os.46557.1.S1_at4/119+6802261..6805757transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12050Os.8753.4.S1_x_at3/119+6802261..6805757transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12050Os.8753.4.S1_at2/119+6802261..6805757transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12050OsAffx.5618.1.S1_x_at1/119+6802261..6805757transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12050OsAffx.5618.1.S1_at1/119+6802261..6805757transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12060OsAffx.493.1.S1_x_at8/119+6806908..6809609hypothetical protein
LOC_Os09g12070OsAffx.30350.1.S1_at1/119+6813647..6815509retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12080OsAffx.17656.1.S1_at11/119+6817035..6819807hypothetical protein
LOC_Os09g12080OsAffx.4390.1.S1_at1/119+6817035..6819807hypothetical protein
LOC_Os09g12090Os.46785.2.S1_x_at4/119+6826191..6830166retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g12090OsAffx.30226.2.S1_x_at2/119+6826191..6830166retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g12090OsAffx.442.1.S1_x_at1/119+6826191..6830166retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g12100Os.45976.1.S1_at2/119+6834261..6837068transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12100Os.45976.1.S1_x_at2/119+6834261..6837068transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12110NANA9+6837171..6843204transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17656.1.S1_at--4--6051Chr09:6817577..6817601 (25 bp)
GAGATCAAGCGTCTGAATGCCGAGC
LOC_Os09g12080
OsAffx.17656.1.S1_at--995--2731Chr09:6817546..6817570 (25 bp)
AAGAACAAAATCATTCCGCCGCCTT
LOC_Os09g12080
OsAffx.17656.1.S1_at--233--91Chr09:6817534..6817558 (25 bp)
ATTCCGCCGCCTTGACTGAATACTA
LOC_Os09g12080
OsAffx.17656.1.S1_at--414--6111Chr09:6817400..6817424 (25 bp)
GAGTCCACGAAGACCGCGTGTCGCA
LOC_Os09g12080
OsAffx.17656.1.S1_at--1015--5311Chr09:6817344..6817368 (25 bp)
GAAGGTGCGAGGAATCCCTAGTGAA
LOC_Os09g12080
OsAffx.17656.1.S1_at--1141--1111Chr09:6817325..6817349 (25 bp)
AGTGAAGATACTTCTGCCTTCGACT
LOC_Os09g12080
OsAffx.17656.1.S1_at--517--6531Chr09:6817262..6817286 (25 bp)
GATTTCGCCACTACGTACAGCGATT
LOC_Os09g12080
OsAffx.17656.1.S1_at--477--71Chr09:6817240..6817264 (25 bp)
ATTGCTGCGCGCATCTGTCAGTGGC
LOC_Os09g12080
OsAffx.17656.1.S1_at--103--2431Chr09:6817192..6817216 (25 bp)
AAAATTGGTCCGAGCACGTTGCCGA
LOC_Os09g12080
OsAffx.17656.1.S1_at--560--7111Chr09:6817136..6817160 (25 bp)
GTCAGCTCTCTGGACATTTTTCCCG
LOC_Os09g12080
OsAffx.17656.1.S1_at--482--2311Chr09:6817080..6817104 (25 bp)
AAAGGAGGGCCGATTCACTGCCAAG
LOC_Os09g12080
Target Sequence 
GAGATCAAGCGTCTGAATGCCGAGCTTAAAAAAGAACAAAATCATTCCGCCGCCTTGACTGAATACTACAACCTCACCGA
GCCGAAGATGGAGGCTCTTCGCCAGGAGGCCCGTAAAGCGAAAGCAGCTGCTGAAAAAGACGCACAAAGGTTGACGCGGG
AGATGGCGAAAGCCACTGAGTCCACGAAGACCGCGTGTCGCACGCTTTGCCTCGCTCTTACTGACATGGGGGCGAAGGTG
CGAGGAATCCCTAGTGAAGATACTTCTGCCTTCGACTTCTTGGAGTGGACCGAACAGGCCGGTGGTGCGGTCTCCGATTT
CGCCACTACGTACAGCGATTGCTGCGCGCATCTGTCAGTGGCCGTCACCATGGGCCTGCTGCAACAAAATTGGTCCGAGC
ACGTTGCCGAGTTCCCCAAGTTTGTGAAGGGTGATTGGGAGGTCAGCTCTCTGGACATTTTTCCCGCACTTCGTGCCTGG
CGCAAACAGTTCTGGCAAAAGGAGGGCCGATTCACTGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis