Browse Element(s) Details


OsAffx.1782.2.S1_at

Description tigr:9629.m02162
TID=OsAffx.1782.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2251011/11Streptomyces cyclase/dehydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22450OsAffx.11158.1.S1_at8/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_x_at5/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_at4/111+12610507..12612419hypothetical protein
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein
LOC_Os01g22550Os.53990.1.S1_at11/111+12649850..12655220Galactosyltransferase family protein, expressed
LOC_Os01g22560Os.11128.1.S1_at2/111+12659818..12660612Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1782.2.S1_at--603--9231Chr01:12635784..12635808 (25 bp)
TCCATTGGCGATCTCTTGAAGGTCT
LOC_Os01g22510
OsAffx.1782.2.S1_at--317--3631Chr01:12636163..12636282 (25 bp)
CTTGCAGAGTACAACTGACGGTGGC
LOC_Os01g22510
OsAffx.1782.2.S1_at--818--4171Chr01:12636504..12636528 (25 bp)
CCCTCAACCTTGACGGGAATCAATC
LOC_Os01g22510
OsAffx.1782.2.S1_at--541--7611Chr01:12636518..12636542 (25 bp)
GGGAATCAATCATTTGCATTCGAAT
LOC_Os01g22510
OsAffx.1782.2.S1_at--1039--4931Chr01:12636533..12636557 (25 bp)
GCATTCGAATACTCATTTCTAAGGA
LOC_Os01g22510
OsAffx.1782.2.S1_at--1024--9771Chr01:12636552..12636576 (25 bp)
TAAGGATTTTAGTCTCATTCAAGAG
LOC_Os01g22510
OsAffx.1782.2.S1_at--521--5971Chr01:12636574..12636598 (25 bp)
GAGAAGCCCAGCGAAGGTCACAATC
LOC_Os01g22510
OsAffx.1782.2.S1_at--402--2751Chr01:12636605..12636629 (25 bp)
AAGACCAGTAGACCACCTAATGCCA
LOC_Os01g22510
OsAffx.1782.2.S1_at--173--9771Chr01:12636622..12636646 (25 bp)
TAATGCCACCCTAGATGCAGTGGAA
LOC_Os01g22510
OsAffx.1782.2.S1_at--709--2651Chr01:12636790..12636814 (25 bp)
AAGCCAATTCATCCTTTGTCTGAGA
LOC_Os01g22510
OsAffx.1782.2.S1_at--869--1411Chr01:12636812..12636836 (25 bp)
AGACAAATTGCGCTGAGTCCTCTTT
LOC_Os01g22510
Target Sequence 
TCCATTGGCGATCTCTTGAAGGTCTTCAAAATAGGGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTA
CAACTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCAGCACTGAAGCCATTTCTGGAAGGGCTGCT
TATGCAAGGTTTAGAACGTTTCGCGACGTTTGCGAAGGAACGATATAGCAAGATCCCTCAACCTTGACGGGAATCAATCA
TTTGCATTCGAATACTCATTTCTAAGGATTTTAGTCTCATTCAAGAGAAGCCCAGCGAAGGTCACAATCGATGTAAAGAC
CAGTAGACCACCTAATGCCACCCTAGATGCAGTGGAAAATTCATCCAAAGGGAATTACAAGAGTTGACTGCTATGAGAAA
TAAAACTGAAATAAAAGAATCATATTGTTGACCATTCTTTTTGGTCATTATAATCAATGAAATGTACCAGCATTGAACAT
GAAACTTTGATAGTATGGCAAAGCCAATTCATCCTTTGTCTGAGACAAATTGCGCTGAGTCCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1782.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis