Browse Element(s) Details


OsAffx.17922.1.S1_x_at

Description tigr:9637.m02377
TID=OsAffx.17922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g592506/11expressed protein
LOC_Os10g142906/11hypothetical protein
LOC_Os12g112405/11hypothetical protein
LOC_Os07g352305/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g088005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59230OsAffx.25936.7.S1_s_at10/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.1.S1_s_at10/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.1.S1_at7/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230Os.57082.1.S1_at4/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.2.S1_x_at4/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.10110.2.S1_at2/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.30648.1.S1_at2/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.5.S1_x_at2/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.29480.2.S1_at1/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.18348.1.S1_at1/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.31267.1.S1_at1/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59240NANA1+34571509..34571745hypothetical protein
LOC_Os01g59250OsAffx.17922.1.S1_x_at6/111+34573101..34576472expressed protein
LOC_Os01g59250Os.9100.1.S3_at2/111+34573101..34576472expressed protein
LOC_Os01g59260Os.10827.1.S1_x_at11/111+34577064..34580351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g59260Os.46055.2.S1_x_at5/111+34577064..34580351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g59270OsAffx.11657.1.S1_at11/111+34587556..34588247NA
LOC_Os01g59280OsAffx.31780.2.S1_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_s_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_x_at5/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.38172.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.43567.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.29987.1.S1_at2/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.1.S1_at1/111+34595533..34599269transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17922.1.S1_x_at--711--977Chr12:6061325..6061349 (25 bp)
AGGAGCAGTTCAGTGGCAGACCATC
LOC_Os12g11240
OsAffx.17922.1.S1_x_at--1151--1978Chr12:6061449..6061473 (25 bp)
ACTGCCTCAGGGAGTTCTTCCAAGA
LOC_Os12g11240
OsAffx.17922.1.S1_x_at--456--5671Chr09:16498439..16498463 (25 bp)
GACATCCGACAGCAGAGCTACCAGA
NONE
OsAffx.17922.1.S1_x_at--1028--4856Chr12:6061534..6061558 (25 bp)
GCTACCAGAGTCGTGTTGCTCAGAT
LOC_Os12g11240
OsAffx.17922.1.S1_x_at--523--2857Chr12:6061569..6061593 (25 bp)
AAGTCTATGGGCCTTGATGCGTGCA
LOC_Os12g11240
OsAffx.17922.1.S1_x_at--343--7517Chr12:6061637..6061661 (25 bp)
GTGGTATGCTGCTTGTGCGCTATTC
LOC_Os12g11240
OsAffx.17922.1.S1_x_at--439--7372Chr09:16498294..16498318 (25 bp)
GTGACCCATTGACCTGCAAATGCTT
NONE
OsAffx.17922.1.S1_x_at--277--632Chr10:7503504..7503527 (24 bp)
ATGCTTTGTTCGACTCAAGGACGCT
LOC_Os10g14290
OsAffx.17922.1.S1_x_at--443--4132Chr09:16498254..16498278 (25 bp)
CGCTGCTAGGCGCTTGGAATTTATA
NONE
OsAffx.17922.1.S1_x_at--412--8532Chr09:16498215..16498239 (25 bp)
TGGACAGTCATCTGGTGGCACCTAG
NONE
OsAffx.17922.1.S1_x_at--254--6876Chr12:6061769..6061793 (25 bp)
GTTTGTGCACTGTACTTTACTTTGA
NONE
Target Sequence 
AGGAGCAGTTCAGTGGCAGACCATCGACATGGCGCAGCTCGCTGCTGCTTATAGACCACCACCTCCAACTCCACCCCCAA
CGGCAGCAGACCGGGGCAAGGGAAAGAGGCTAGCAGCAAACACTACTGCCTCAGGGAGTTCTTCCAAGAAGTCCCGAAGC
GACTCCGCTGGACTGGCTTTGGAGAGGATTGCGGACATCCGACAGCAGAGCTACCAGAGTCGTGTTGCTCAGATGGAAGC
AGAGAAGTCTATGGGCCTTGATGCGTGCATGGAGTTGGTGGAAAATGATGGCCATGAAATTGGAGGAAGTGTGTGGTATG
CTGCTTGTGCGCTATTCCGTGACCCATTGACCTGCAAATGCTTTGTTCGACTCAAGGACGCTGCTAGGCGCTTGGAATTT
ATACGCACTGGTGGTACTGGACAGTCATCTGGTGGCACCTAGTAGTTTGTGCACTGTACTTTACTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17922.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis