Browse Element(s) Details


OsAffx.17941.1.A1_at

Description tigr:9637.m02348
TID=OsAffx.17941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2686011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26820Os.53879.1.S1_at11/119+16293641..16296109Exo70 exocyst complex subunit family protein, expressed
LOC_Os09g26830Os.11828.1.S1_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26830Os.11828.1.S2_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein
LOC_Os09g26850NANA9+16318841..16319799hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17941.1.A1_at--663--7492Chr11:2427843..2427862 (20 bp)
GTGGTTGGTCACAATGAATAGATGC
NONE
OsAffx.17941.1.A1_at--340--5231Chr09:16320681..16320705 (25 bp)
GAATAGATGCTGGACCGTTGACCGT
LOC_Os09g26860
OsAffx.17941.1.A1_at--469--291Chr09:16320679..16320703 (25 bp)
ATAGATGCTGGACCGTTGACCGTCT
LOC_Os09g26860
OsAffx.17941.1.A1_at--757--533Chr09:16996797..16996821 (25 bp)
ATCGCTGTGTTCTTTGCGATCAGCA
NONE
OsAffx.17941.1.A1_at--132--7433Chr09:16996791..16996815 (25 bp)
GTGTTCTTTGCGATCAGCAGGAGGA
NONE
OsAffx.17941.1.A1_at--542--10273Chr09:16996785..16996809 (25 bp)
TTTGCGATCAGCAGGAGGAAAGCAT
NONE
OsAffx.17941.1.A1_at--672--9694Chr08:3106507..3106531 (25 bp)
TCACATCTTGGTAGCATGCCCTGAA
NONE
OsAffx.17941.1.A1_at--345--435Chr08:3106511..3106535 (25 bp)
ATCTTGGTAGCATGCCCTGAATCGA
NONE
OsAffx.17941.1.A1_at--660--7856Chr08:3106516..3106540 (25 bp)
GGTAGCATGCCCTGAATCGAGACAA
NONE
OsAffx.17941.1.A1_at--403--4997Chr08:3106520..3106544 (25 bp)
GCATGCCCTGAATCGAGACAATTAT
NONE
OsAffx.17941.1.A1_at--244--4277Chr08:3106526..3106550 (25 bp)
CCTGAATCGAGACAATTATGGTGGT
NONE
Target Sequence 
GTGGTTGGTCACAATGAATAGATGCTGGACCGTTGACCGTCTGCGCAGTCGAGGGTTGCCACACCCGGATCGCTGTGTTC
TTTGCGATCAGCAGGAGGAAAGCATTGATCACATCTTGGTAGCATGCCCTGAATCGAGACAATTATGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17941.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis