Browse Element(s) Details


OsAffx.17941.1.A1_s_at

Description tigr:9637.m02348
TID=OsAffx.17941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2686011/11hypothetical protein
LOC_Os08g0580011/11NB-ARC domain containing protein, expressed
LOC_Os05g456801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26820Os.53879.1.S1_at11/119+16293641..16296109Exo70 exocyst complex subunit family protein, expressed
LOC_Os09g26830Os.11828.1.S1_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26830Os.11828.1.S2_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein
LOC_Os09g26850NANA9+16318841..16319799hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionribonuclease H activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17941.1.A1_s_at--175--3953Chr08:3106018..3106042 (25 bp)
CGGACAAACTATCCTCTTCTGGGAA
LOC_Os08g05800
OsAffx.17941.1.A1_s_at--831--2775Chr08:3106056..3106080 (25 bp)
AAGAGGGTTGCATTCGGTCCTTTGC
LOC_Os08g05800
OsAffx.17941.1.A1_s_at--154--7272Chr08:3106072..3106096 (25 bp)
GTCCTTTGCTCCGAACATCTATGAT
LOC_Os08g05800
OsAffx.17941.1.A1_s_at--1016--9435Chr08:3106123..3106147 (25 bp)
TCGGACGGTGGCTGAGGCACTAACA
LOC_Os08g05800
OsAffx.17941.1.A1_s_at--626--5115Chr08:3106139..3106163 (25 bp)
GCACTAACAGGTCGCCAATGGATCA
LOC_Os08g05800
OsAffx.17941.1.A1_s_at--984--2074Chr08:3106167..3106191 (25 bp)
ACATCCGAGGAGCACTTGGGATCCA
LOC_Os08g05800
OsAffx.17941.1.A1_s_at--1049--3595Chr08:3106181..3106205 (25 bp)
CTTGGGATCCAACCTATTCTAGAAT
LOC_Os08g05800
OsAffx.17941.1.A1_s_at--1118--7795Chr08:3106218..3106242 (25 bp)
GGTCGCTTGTCCAAATGGTGGATCT
LOC_Os08g05800
OsAffx.17941.1.A1_s_at--133--8576Chr08:3106236..3106260 (25 bp)
TGGATCTTGATCCTACTACTCCTGA
LOC_Os08g05800
OsAffx.17941.1.A1_s_at--1024--6016Chr08:3106280..3106304 (25 bp)
GAGAGTTCGGGCCAATACAGCTCAA
LOC_Os08g05800
OsAffx.17941.1.A1_s_at--669--7176Chr08:3106437..3106461 (25 bp)
GTCTGCGCAGTCGAGGGTTGCCACA
LOC_Os08g05800
Target Sequence 
CGGACAAACTATCCTCTTCTGGGAAGATAGCTGGTTGCAAGAGGGTTGCATTCGGTCCTTTGCTCCGAACATCTATGATA
AAATTCCACCATGCGTGCGCCGGCGTCGGACGGTGGCTGAGGCACTAACAGGTCGCCAATGGATCAAAGACATCCGAGGA
GCACTTGGGATCCAACCTATTCTAGAATATCTAAAGCTTTGGTCGCTTGTCCAAATGGTGGATCTTGATCCTACTACTCC
TGATTCAATCATCTGGAAATGGGAGAGTTCGGGCCAATACAGCTCAAAATCTGCCTATAAGGCCTTGTTTTTGGGTCGTG
TCACCTTCCTTTCCACCCCAATTTGGAAGTCACTCGCTCCGCCTCGATGCCGCTTCTTCTTGTGGTTGGTCACAATGAAT
AGATGCTGGACCGTTGACCGTCTGCGCAGTCGAGGGTTGCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17941.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis