Browse Element(s) Details


OsAffx.18038.1.S1_at

Description tigr:9637.m03218
TID=OsAffx.18038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to serinethreonine kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3784011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37790Os.49232.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.56251.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.23910.2.A1_at6/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.45982.1.A1_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.18435.1.S1_x_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37800OsAffx.6510.1.S1_at11/119+21778729..21782005D-mannose binding lectin family protein
LOC_Os09g37810OsAffx.6511.1.S1_at11/119+21782574..21784157D-mannose binding lectin family protein
LOC_Os09g37820Os.35344.18.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820Os.35344.3.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820OsAffx.22940.5.S1_x_at2/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37830OsAffx.30178.1.S1_at11/119+21795432..21796306hypothetical protein
LOC_Os09g37840OsAffx.30180.4.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.18038.1.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.4.S1_x_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.2.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.3.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840Os.10719.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37850NANA9+21822765..21824095retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g37860Os.16852.1.S1_at11/119+21827697..21833011Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18038.1.S1_at--382--2071Chr09:21798141..21798165 (25 bp)
ACATTGCTCCTGAATATTCTACCGA
LOC_Os09g37840
OsAffx.18038.1.S1_at--459--3671Chr09:21798123..21798147 (25 bp)
CTACCGAGGGAAGCTTTTCTGTCAA
LOC_Os09g37840
OsAffx.18038.1.S1_at--646--7851Chr09:21798052..21798076 (25 bp)
GGTATCCGGATAAGCTCTACCGATA
LOC_Os09g37840
OsAffx.18038.1.S1_at--360--5211Chr09:21798022..21798046 (25 bp)
GAATTCCCAAGCCTTATAGTCTATG
LOC_Os09g37840
OsAffx.18038.1.S1_at--1007--6551Chr09:21797837..21797861 (25 bp)
GATTCATCCATTGCGGAGAGCAGTT
LOC_Os09g37840
OsAffx.18038.1.S1_at--891--4331Chr09:21797787..21797811 (25 bp)
CCACGTCGGGCTCTTGTGTGTAGAA
LOC_Os09g37840
OsAffx.18038.1.S1_at--411--1451Chr09:21797766..21797790 (25 bp)
AGAAGACAACCCGAACAGCAGGCCG
LOC_Os09g37840
OsAffx.18038.1.S1_at--362--2151Chr09:21797752..21797776 (25 bp)
ACAGCAGGCCGCTCATGTCATCTGT
LOC_Os09g37840
OsAffx.18038.1.S1_at--455--851Chr09:21797710..21797734 (25 bp)
ATGGAAGCACAACATTTCTGGCAAT
LOC_Os09g37840
OsAffx.18038.1.S1_at--1008--8211Chr09:21797691..21797715 (25 bp)
GGCAATGCCAAATCAGCCTGCATAT
LOC_Os09g37840
OsAffx.18038.1.S1_at--535--2951Chr09:21797637..21797661 (25 bp)
AATGACAGACGGTAGCTCTAGAAAC
LOC_Os09g37840
Target Sequence 
ACATTGCTCCTGAATATTCTACCGAGGGAAGCTTTTCTGTCAAGTCTGACGTCTATAGTTTTGGAGTACTGCTCTTGGAG
ATTGTAAGTGGTATCCGGATAAGCTCTACCGATATCATGGAATTCCCAAGCCTTATAGTCTATGCATGGAGCCTATGGAA
GGAAGGCAAGGCGAAAAACCTGATAGATTCATCCATTGCGGAGAGCAGTTCATTGGATGAAGTCCAGCTTTGCATCCACG
TCGGGCTCTTGTGTGTAGAAGACAACCCGAACAGCAGGCCGCTCATGTCATCTGTTGTGTCCATCTTGGAGAATGGAAGC
ACAACATTTCTGGCAATGCCAAATCAGCCTGCATATTTTGCACAAACAACAAGTGAAATGGACAAAATGACAGACGGTAG
CTCTAGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis