Browse Element(s) Details


OsAffx.18049.1.S1_at

Description tigr:9637.m03300
TID=OsAffx.18049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ATTS0887 product-related.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3875011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed
LOC_Os09g38768Os.25141.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_x_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38790Os.37725.1.A1_s_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38790Os.8410.1.S1_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38800OsAffx.30194.2.S1_at11/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38800OsAffx.30194.1.S1_x_at1/119+22291930..22295105wall-associated kinase-like 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18049.1.S1_at--136--2911Chr09:22268093..22268117 (25 bp)
AAGGTCAGCCGGTTCTATGCTCTGA
LOC_Os09g38750
OsAffx.18049.1.S1_at--527--3851Chr09:22268072..22268096 (25 bp)
CTGACTCTTGTCATTCGATCTTGGG
LOC_Os09g38750
OsAffx.18049.1.S1_at--823--2451Chr09:22266921..22266945 (25 bp)
AACAAGGATGTCTCGCACAGTGCAC
LOC_Os09g38750
OsAffx.18049.1.S1_at--1067--1111Chr09:22266903..22266927 (25 bp)
AGTGCACTTTATCTTTATTGGTCAG
LOC_Os09g38750
OsAffx.18049.1.S1_at--990--5231Chr09:22266879..22266903 (25 bp)
GAATCGACACCCATTAACTCTTATC
LOC_Os09g38750
OsAffx.18049.1.S1_at--213--3251Chr09:22266838..22266861 (24 bp)
CAACTCCTTATACTGTCCTATCAAA
LOC_Os09g38750
OsAffx.18049.1.S1_at--130--1971Chr09:22266320..22266344 (25 bp)
ACTGTTGCAGTGAAACCGGCTACCG
LOC_Os09g38750
OsAffx.18049.1.S1_at--710--4851Chr09:22266302..22266326 (25 bp)
GCTACCGCTTGCCATTGAAATGTGT
LOC_Os09g38750
OsAffx.18049.1.S1_at--1065--2891Chr09:22266231..22266255 (25 bp)
AAGGTGCTGGACGATGCATCCACGT
LOC_Os09g38750
OsAffx.18049.1.S1_at--512--8211Chr09:22265506..22265530 (25 bp)
GGAATGCTGCTAATAAGTGGCCCAT
LOC_Os09g38750
OsAffx.18049.1.S1_at--1062--7531Chr09:22265490..22265514 (25 bp)
GTGGCCCATTTGTATACTATCGGAA
LOC_Os09g38750
Target Sequence 
AAGGTCAGCCGGTTCTATGCTCTGACTCTTGTCATTCGATCTTGGGGCTCACCGTGGAGGGGGGAATCGATCTTGGGAGG
CCTGATGGGGCAGGCCAACAGGGTTTGTAAGAACAAGGATGTCTCGCACAGTGCACTTTATCTTTATTGGTCAGAATCGA
CACCCATTAACTCTTATCCCCAGTCCCCACCCCCGCAACTCCTTATACTGTCCTATCAAAGCGATGAGAAGTACTGTTGC
AGTGAAACCGGCTACCGCTTGCCATTGAAATGTGTAGAAGTACAAAATGTTACCAAAGAAGGAAATAATACTAAGCAACG
GAAGGTGCTGGACGATGCATCCACGTCAGGTGGTTCAAAGCATTACACAACTTACAGGAGTTGTGTACCATTGGAGGATG
AAGAGAAGTTATCTGTTCTTGGTTTTGAGGTTTTTATTCTTTCTTATAGCATGGTTATGATGGCTGGAATGCTGCTAATA
AGTGGCCCATTTGTATACTATCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis