Browse Element(s) Details


OsAffx.18116.1.S1_at

Description tigr:9638.m00289
TID=OsAffx.18116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0382011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03760Os.46871.1.S1_at10/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.46058.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.8362.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03770OsAffx.30564.2.S1_s_at11/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.2.S1_x_at10/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_s_at6/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_at3/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.3.S1_at1/1110+1688087..1688907hypothetical protein
LOC_Os10g03780Os.46561.3.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.2.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.4.S1_x_at4/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780OsAffx.30264.1.S1_at2/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.8362.2.S1_x_at1/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03790OsAffx.20771.1.S1_x_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03790OsAffx.20771.1.S1_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_x_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03809NANA10+1706335..1706961NA
LOC_Os10g03820OsAffx.18116.1.S1_at11/1110+1710568..1711389hypothetical protein
LOC_Os10g03830Os.27532.1.S1_a_at11/1110+1713491..1724273expressed protein
LOC_Os10g03840OsAffx.30263.1.S1_at11/1110+1725136..1726654hypothetical protein
LOC_Os10g03850OsAffx.30264.1.S1_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.27520.4.S1_a_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.10255.1.S1_s_at7/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.38269.1.S1_x_at2/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.8362.2.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.51910.1.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03860Os.46707.1.A1_at2/1110+1736069..1736981expressed protein
LOC_Os10g03860Os.55601.1.S1_at1/1110+1736069..1736981expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18116.1.S1_at--257--7451Chr10:1711070..1711094 (25 bp)
GTGTCGTCGCTAGCGGATCTGGCCC
LOC_Os10g03820
OsAffx.18116.1.S1_at--22--4191Chr10:1711035..1711059 (25 bp)
CCCCGCGTGGCCAGATCGGGACAGA
LOC_Os10g03820
OsAffx.18116.1.S1_at--1014--1271Chr10:1711023..1711047 (25 bp)
AGATCGGGACAGAGCGGCGCTGGCC
LOC_Os10g03820
OsAffx.18116.1.S1_at--514--3991Chr10:1710999..1711023 (25 bp)
CGGGCGCCGCATCAGAGGAGGACGA
LOC_Os10g03820
OsAffx.18116.1.S1_at--1010--9411Chr10:1710957..1710981 (25 bp)
TCGTGGCACCGACGGAGAAGGCCGA
LOC_Os10g03820
OsAffx.18116.1.S1_at--566--8331Chr10:1710928..1710952 (25 bp)
GGCTGACGCAGCACCGGCTAGGGCA
LOC_Os10g03820
OsAffx.18116.1.S1_at--618--1771Chr10:1710916..1710940 (25 bp)
ACCGGCTAGGGCAGTCGCGACGTCG
LOC_Os10g03820
OsAffx.18116.1.S1_at--492--7971Chr10:1710848..1710872 (25 bp)
GGATCTGGCTCCCTCCAGGCCAGAT
LOC_Os10g03820
OsAffx.18116.1.S1_at--193--891Chr10:1710832..1710856 (25 bp)
AGGCCAGATCCAACGCTCGCTGCTG
LOC_Os10g03820
OsAffx.18116.1.S1_at--694--1291Chr10:1710827..1710851 (25 bp)
AGATCCAACGCTCGCTGCTGGGCCA
LOC_Os10g03820
OsAffx.18116.1.S1_at--849--8651Chr10:1710809..1710833 (25 bp)
TGGGCCATCGAAGGAGGCTAGCTCC
LOC_Os10g03820
Target Sequence 
GTGTCGTCGCTAGCGGATCTGGCCCATCCCCCCTCCCCCGCGTGGCCAGATCGGGACAGAGCGGCGCTGGCCGGGCGCCG
CATCAGAGGAGGACGAGGCGCCAGCTGGGGCAGTCGTGGCACCGACGGAGAAGGCCGACGGTGGCTGACGCAGCACCGGC
TAGGGCAGTCGCGACGTCGACGGAGGAGGCGACGTCGCTGGCGGCGGGGACGAGGCGCCGCCGGATCTGGCTCCCTCCAG
GCCAGATCCAACGCTCGCTGCTGGGCCATCGAAGGAGGCTAGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis