Browse Element(s) Details


OsAffx.18333.1.S1_at

Description tigr:9638.m01803
TID=OsAffx.18333.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative hyperpolarization-activated cation channel protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g495106/11amino acid transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49480Os.52592.1.S1_at11/112+30227417..30229842Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein
LOC_Os02g49510Os.52768.1.S1_at9/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.18333.1.S1_at6/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.22086.1.S1_x_at2/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49520Os.50290.1.S1_at11/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.9217.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.21372.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18333.1.S1_at--442--10551Chr10:10716167..10716189 (23 bp)
TTCATCATCGAGTGGCCATGGAGCC
NONE
OsAffx.18333.1.S1_at--528--5893Chr10:10713077..10713101 (25 bp)
GAGCTCCGGTCGACGAACGCCGGAA
NONE
OsAffx.18333.1.S1_at--335--4093Chr10:10713067..10713091 (25 bp)
CGACGAACGCCGGAAGCCACAGGAG
NONE
OsAffx.18333.1.S1_at--1091--8173Chr10:10713056..10713080 (25 bp)
GGAAGCCACAGGAGAAGGCCCGCGC
NONE
OsAffx.18333.1.S1_at--924--1171Chr10:10712974..10712998 (25 bp)
AGTAGCGGTCGCGACGTCGTCAAGC
NONE
OsAffx.18333.1.S1_at--472--5753Chr10:10712962..10712986 (25 bp)
GACGTCGTCAAGCTTCCTTTAACAG
NONE
OsAffx.18333.1.S1_at--989--9393Chr10:10712958..10712982 (25 bp)
TCGTCAAGCTTCCTTTAACAGCGCC
NONE
OsAffx.18333.1.S1_at--373--4411Chr10:10712638..10712662 (25 bp)
GCCACCGCTTGCAACTTAGCTATAG
NONE
OsAffx.18333.1.S1_at--1087--4891Chr10:10712632..10712656 (25 bp)
GCTTGCAACTTAGCTATAGCGTTTG
NONE
OsAffx.18333.1.S1_at--181--5151Chr10:10712628..10712652 (25 bp)
GCAACTTAGCTATAGCGTTTGGAGT
NONE
OsAffx.18333.1.S1_at--476--10013Chr10:10712622..10712646 (25 bp)
TAGCTATAGCGTTTGGAGTGGAAAT
NONE
Target Sequence 
TTCATCATCGAGTGGCCATGGAGCCGTGGAGCTCCGGTCGACGAACGCCGGAAGCCACAGGAGAAGGCCCGCGCCCGCGG
CTCCGTCGGCTGGACGACGTGCTCCCCGGCGGTGTTGTCGATGAGGGAGGGAGTAGCGGTCGCGACGTCGTCAAGCTTCC
TTTAACAGCGCCATCCCGCCGCCAAGCTTCCTGCTCGCTGCTTGCTGGCTCGCTGGCCGACGGAGCCGCCGCTCCTCTCC
GCCGTGCGCTGGCCGCGGGGCCGCCGGCCGCCGCGCCTCCCTGCGCGTGGCAGCCGCGTCGCGCATCCCTGCGCGCTGGC
CGCGGGGGGCGCCACGCCTCCCTGCCCCGCGCGCCCGCCGATCCGCCGCCGCGCCTCCCTGCCCGCGCCCGACTCCACCG
ACTCCGCCGCGCGCTGGCCCGCGGCAGCTGCCCCGCGCTGCCGCCGCCGCTTGTCGCGTGCGCCGCCGCCACCGCTTGCA
ACTTAGCTATAGCGTTTGGAGTGGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis