Browse Element(s) Details


OsAffx.18625.4.S1_at

Description tigr:9640.m00071
TID=OsAffx.18625.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0171011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01660NANA12+399407..400441retrotransposon protein, putative, unclassified
LOC_Os12g01680OsAffx.25952.3.S1_at9/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01680OsAffx.25952.1.S1_s_at2/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01680OsAffx.25952.1.S1_x_at2/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01690OsAffx.31541.1.S1_s_at1/1112+413959..414621PRA1 family protein
LOC_Os12g01700Os.47316.2.S1_at8/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01700Os.47316.1.S1_at2/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01710OsAffx.18625.4.S1_x_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.5.S1_s_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.4.S1_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_x_at6/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_at2/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.5875.1.S1_at1/1112+421126..424359hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_x_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.6959.1.S1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.30274.1.A1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01730Os.56166.1.S1_at11/1112+433076..437615Multicopper oxidase family protein, expressed
LOC_Os12g01740Os.6829.1.S1_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740OsAffx.31542.1.S1_x_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_s_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_at3/1112+438035..442649Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18625.4.S1_at--1005--7811Chr12:422656..422680 (25 bp)
GGATTGCCGGCAACTACGGTTCCGT
LOC_Os12g01710
OsAffx.18625.4.S1_at--256--6571Chr12:422655..422679 (25 bp)
GATTGCCGGCAACTACGGTTCCGTG
LOC_Os12g01710
OsAffx.18625.4.S1_at--810--71Chr12:422654..422678 (25 bp)
ATTGCCGGCAACTACGGTTCCGTGA
LOC_Os12g01710
OsAffx.18625.4.S1_at--68--10711Chr12:422653..422677 (25 bp)
TTGCCGGCAACTACGGTTCCGTGAA
LOC_Os12g01710
OsAffx.18625.4.S1_at--193--9191Chr12:422652..422676 (25 bp)
TGCCGGCAACTACGGTTCCGTGAAC
LOC_Os12g01710
OsAffx.18625.4.S1_at--929--3931Chr12:422649..422673 (25 bp)
CGGCAACTACGGTTCCGTGAACATT
LOC_Os12g01710
OsAffx.18625.4.S1_at--814--8211Chr12:422648..422672 (25 bp)
GGCAACTACGGTTCCGTGAACATTA
LOC_Os12g01710
OsAffx.18625.4.S1_at--864--5131Chr12:422647..422671 (25 bp)
GCAACTACGGTTCCGTGAACATTAG
LOC_Os12g01710
OsAffx.18625.4.S1_at--155--5031Chr12:422560..422584 (25 bp)
GCAGTGGGGGCTTCAACATGTCTAT
LOC_Os12g01710
OsAffx.18625.4.S1_at--181--2431Chr12:421651..421675 (25 bp)
AAAAGCAAAGAAAGGCAGCATTAGA
LOC_Os12g01710
OsAffx.18625.4.S1_at--449--5571Chr12:421642..421666 (25 bp)
GAAAGGCAGCATTAGAGGAAATTTG
LOC_Os12g01710
Target Sequence 
GGATTGCCGGCAACTACGGTTCCGTGAACATTAGCTTAGCACTTCTCCACAACGCCATAGAGGCCACGATGCACATCCAG
ATAACCGAAGTGCGTGGCAGTGGGGGCTTCAACATGTCTATGGCTTGTCGTGTCGGTCAAATACCTGATGAAATCAAGCT
CTTTGAAAGTGTTGCCATTGCCAAGCCGTGTCAGCTAAACAAGAGGTTTGTGCTTGCCATTGTCAAGCGCGGCATCTTGG
TGTTAGACTTGAAGGTTAAGCGGAGTGGCGCCTCAGAGGAGGAGGAGCCAGTCTGTATGCTCCGTGGCTTGAAGGCAAAA
GCACATAGCCAAGTCATCCTACCTATGATATTTGATTGCGCCACCATTTTGGTGTTACAAACTGCTGTTCGCCACAGATT
AGCAAAAGTCCAGGGGTATCTAAAAGCAAAGAAAGGCAGCATTAGAGGAAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18625.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis