Browse Element(s) Details


OsAffx.18625.4.S1_x_at

Description tigr:9640.m00071
TID=OsAffx.18625.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0171011/11hypothetical protein
LOC_Os11g016307/11RNA polymerase Rpb1, domain 2 family protein
LOC_Os05g058601/11DNA-directed RNA polymerase II largest subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01660NANA12+399407..400441retrotransposon protein, putative, unclassified
LOC_Os12g01680OsAffx.25952.3.S1_at9/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01680OsAffx.25952.1.S1_s_at2/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01680OsAffx.25952.1.S1_x_at2/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01690OsAffx.31541.1.S1_s_at1/1112+413959..414621PRA1 family protein
LOC_Os12g01700Os.47316.2.S1_at8/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01700Os.47316.1.S1_at2/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01710OsAffx.18625.4.S1_x_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.5.S1_s_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.4.S1_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_x_at6/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_at2/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.5875.1.S1_at1/1112+421126..424359hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_x_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.6959.1.S1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.30274.1.A1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01730Os.56166.1.S1_at11/1112+433076..437615Multicopper oxidase family protein, expressed
LOC_Os12g01740Os.6829.1.S1_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740OsAffx.31542.1.S1_x_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_s_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_at3/1112+438035..442649Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0005199molecular_functionstructural constituent of cell wall
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18625.4.S1_x_at--67--10711Chr12:422653..422677 (25 bp)
TTGCCGGCAACTACGGTTCCGTGAA
LOC_Os12g01710
OsAffx.18625.4.S1_x_at--1098--5472Chr12:422631..422655 (25 bp)
GAACATTAGCTTAGCACTTCTCCAC
LOC_Os12g01710
OsAffx.18625.4.S1_x_at--937--8292Chr12:422552..422576 (25 bp)
GGCTTCAACATGTCTATGGCTTGTC
LOC_Os12g01710
OsAffx.18625.4.S1_x_at--77--852Chr12:422537..422561 (25 bp)
ATGGCTTGTCGTGTCGGTCAAATAC
LOC_Os12g01710
OsAffx.18625.4.S1_x_at--659--5572Chr11:444165..444185 (21 bp)
GAAAGTGTTGCCATTGCCAAGCCGT
NONE
OsAffx.18625.4.S1_x_at--728--1332Chr12:422455..422479 (25 bp)
AGAGGTTTGTGCTTGCCATTGTCAA
LOC_Os12g01710
OsAffx.18625.4.S1_x_at--825--2672Chr12:422432..422456 (25 bp)
AAGCGCGGCATCTTGGTGTTAGACT
LOC_Os12g01710
OsAffx.18625.4.S1_x_at--664--3451Chr12:422368..422392 (25 bp)
CAGTCTGTATGCTCCGTGGCTTGAA
LOC_Os12g01710
OsAffx.18625.4.S1_x_at--603--8832Chr12:422311..422335 (25 bp)
TGATATTTGATTGCGCCACCATTTT
LOC_Os12g01710
OsAffx.18625.4.S1_x_at--886--7411Chr12:421701..421725 (25 bp)
GTGTTACAAACTGCTGTTCGCCACA
LOC_Os12g01710
OsAffx.18625.4.S1_x_at--870--1634Chr12:421610..421634 (25 bp)
AGCGTGTTGATTTCTCAGCTCGTAC
LOC_Os12g01710
Target Sequence 
TTGCCGGCAACTACGGTTCCGTGAACATTAGCTTAGCACTTCTCCACAACGCCATAGAGGCCACGATGCACATCCAGATA
ACCGAAGTGCGTGGCAGTGGGGGCTTCAACATGTCTATGGCTTGTCGTGTCGGTCAAATACCTGATGAAATCAAGCTCTT
TGAAAGTGTTGCCATTGCCAAGCCGTGTCAGCTAAACAAGAGGTTTGTGCTTGCCATTGTCAAGCGCGGCATCTTGGTGT
TAGACTTGAAGGTTAAGCGGAGTGGCGCCTCAGAGGAGGAGGAGCCAGTCTGTATGCTCCGTGGCTTGAAGGCAAAAGCA
CATAGCCAAGTCATCCTACCTATGATATTTGATTGCGCCACCATTTTGGTGTTACAAACTGCTGTTCGCCACAGATTAGC
AAAAGTCCAGGGGTATCTAAAAGCAAAGAAAGGCAGCATTAGAGGAAATTTGATGGGGAAGCGTGTTGATTTCTCAGCTC
GTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18625.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis