Browse Element(s) Details


OsAffx.19429.1.S1_x_at

Description tigr:9639.m04459
TID=OsAffx.19429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4769011/11Zinc finger, C3HC4 type family protein
LOC_Os11g477001/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein
LOC_Os11g47630Os.51307.1.S1_at11/1111+28208091..28208934Zinc finger, C2H2 type family protein, expressed
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein
LOC_Os11g47650Os.9833.1.S1_at11/1111+28216432..28219984expressed protein
LOC_Os11g47650Os.54085.1.S1_at3/1111+28216432..28219984expressed protein
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47770OsAffx.31529.1.S1_at9/1111+28251466..28253263selT/selW/selH selenoprotein domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19429.1.S1_x_at--837--8771Chr11:28226190..28226214 (25 bp)
TGTTCATCGGCCTCCTGGCCGTCAT
LOC_Os11g47690
OsAffx.19429.1.S1_x_at--613--9671Chr11:28226256..28226280 (25 bp)
TCACCTTCTGCGACACCAGGAGGCG
LOC_Os11g47690
OsAffx.19429.1.S1_x_at--593--10591Chr11:28226261..28226285 (25 bp)
TTCTGCGACACCAGGAGGCGCCGTC
LOC_Os11g47690
OsAffx.19429.1.S1_x_at--852--9111Chr11:28226264..28226288 (25 bp)
TGCGACACCAGGAGGCGCCGTCGAC
LOC_Os11g47690
OsAffx.19429.1.S1_x_at--1099--951Chr11:28226364..28226388 (25 bp)
AGGACGACATGATGAGCTCGTCGTC
LOC_Os11g47690
OsAffx.19429.1.S1_x_at--186--4111Chr11:28226394..28226418 (25 bp)
CGAAGCTGGTGGTGTGCCCGTACAA
LOC_Os11g47690
OsAffx.19429.1.S1_x_at--625--1611Chr11:28226397..28226421 (25 bp)
AGCTGGTGGTGTGCCCGTACAAGAA
LOC_Os11g47690
OsAffx.19429.1.S1_x_at--376--8611Chr11:28226403..28226427 (25 bp)
TGGTGTGCCCGTACAAGAAGGCGGA
LOC_Os11g47690
OsAffx.19429.1.S1_x_at--959--4652Chr11:28226490..28226514 (25 bp)
GCGTGCTGCCGGAGTGCATGCACTA
LOC_Os11g47690
OsAffx.19429.1.S1_x_at--282--9031Chr11:28226508..28226532 (25 bp)
TGCACTACTTCCACGTGGACTGCAT
LOC_Os11g47690
OsAffx.19429.1.S1_x_at--895--1911Chr11:28226520..28226544 (25 bp)
ACGTGGACTGCATCGGCACCTGGCT
LOC_Os11g47690
Target Sequence 
TGTTCATCGGCCTCCTGGCCGTCATGTGCGTCGCCGTCGTGCTCCTGCTGCACCACTGCGTCCTCGTCACCTTCTGCGAC
ACCAGGAGGCGCCGTCGACGCCGACGCCGCCGGGGCACCTCCACGCAGCAGCAGCACGTGCAGCAGGGGGAGGACGACGA
CGACGACGACGACGAGGACGACATGATGAGCTCGTCGTCGCAGGCGAAGCTGGTGGTGTGCCCGTACAAGAAGGCGGAGG
AGTGGGGCGAGGCGATGTGCCCGGTGTGCCTGTCGGAGTTCGGCGACGGCGAGGCGGTGCGCGTGCTGCCGGAGTGCATG
CACTACTTCCACGTGGACTGCATCGGCACCTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19429.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis