Browse Element(s) Details


OsAffx.19474.1.S1_at

Description tigr:9640.m00292
TID=OsAffx.19474.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0379411/11expressed protein
LOC_Os12g037808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03740OsAffx.6986.1.S1_at11/1111+1467904..1468522pectinesterase inhibitor domain containing protein, expressed
LOC_Os11g03750OsAffx.31565.1.S1_at11/1111+1470820..1471377pectinesterase inhibitor domain containing protein
LOC_Os11g03760Os.17651.1.S1_at11/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_x_at10/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_a_at9/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.4.S1_x_at6/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_x_at2/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_at1/1111+1471914..1476591expressed protein
LOC_Os11g03770OsAffx.30802.1.S1_at11/1111+1480581..1481553hypothetical protein
LOC_Os11g03780Os.5087.1.S1_at11/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780OsAffx.7470.1.S1_x_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780Os.51413.1.S1_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03794Os.8596.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.19474.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.18657.1.S1_at2/1111+1490964..1496196expressed protein
LOC_Os11g03810OsAffx.24436.3.S1_at9/1111+1500738..1504746hypothetical protein
LOC_Os11g03810OsAffx.7475.1.S1_at3/1111+1500738..1504746hypothetical protein
LOC_Os11g03820Os.17338.1.S1_at11/1111+1505830..1511513D-mannose binding lectin family protein, expressed
LOC_Os11g03830Os.46785.2.S1_x_at5/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.30226.2.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.442.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830Os.13704.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.21756.3.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19474.1.S1_at--618--1592Chr12:1540069..1540093 (25 bp)
AGCTCGAGCGAGATGTTGCCAAGGA
LOC_Os12g03780
OsAffx.19474.1.S1_at--148--4812Chr12:1540070..1540094 (25 bp)
GCTCGAGCGAGATGTTGCCAAGGAC
LOC_Os12g03780
OsAffx.19474.1.S1_at--414--3792Chr12:1540071..1540095 (25 bp)
CTCGAGCGAGATGTTGCCAAGGACT
LOC_Os12g03780
OsAffx.19474.1.S1_at--741--9372Chr12:1540072..1540096 (25 bp)
TCGAGCGAGATGTTGCCAAGGACTT
LOC_Os12g03780
OsAffx.19474.1.S1_at--809--4052Chr12:1540073..1540097 (25 bp)
CGAGCGAGATGTTGCCAAGGACTTA
LOC_Os12g03780
OsAffx.19474.1.S1_at--235--5872Chr12:1540074..1540098 (25 bp)
GAGCGAGATGTTGCCAAGGACTTAA
LOC_Os12g03780
OsAffx.19474.1.S1_at--584--3512Chr12:1540124..1540148 (25 bp)
CATGATGTCGATGGTGCAACTCGAC
LOC_Os12g03780
OsAffx.19474.1.S1_at--444--712Chr12:1540125..1540149 (25 bp)
ATGATGTCGATGGTGCAACTCGACA
LOC_Os12g03780
OsAffx.19474.1.S1_at--317--6092Chr12:1540154..1540178 (25 bp)
GAGTAGCGCGGGGACAGAGCAACTG
NONE
OsAffx.19474.1.S1_at--1029--1172Chr12:1540155..1540179 (25 bp)
AGTAGCGCGGGGACAGAGCAACTGC
NONE
OsAffx.19474.1.S1_at--305--9992Chr12:1540157..1540181 (25 bp)
TAGCGCGGGGACAGAGCAACTGCTT
NONE
Target Sequence 
AGCTCGAGCGAGATGTTGCCAAGGACTTAANGGCTCGGGGAGCTGAGGCACCTTGNCATGATGTCGATGGTGCAACTCGA
CANAAGGAGTAGCGCGGGGACAGAGCAACTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis