Browse Element(s) Details


OsAffx.19574.1.S1_at

Description tigr:9640.m00876
TID=OsAffx.19574.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0938011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09330OsAffx.10071.1.S1_at5/1112+4894827..4896151transposon protein, putative, Mariner sub-class
LOC_Os12g09340OsAffx.31659.2.S1_at11/1112+4896621..4897088hypothetical protein
LOC_Os12g09340OsAffx.31659.1.S1_s_at11/1112+4896621..4897088hypothetical protein
LOC_Os12g09350Os.52242.1.S1_at1/1112+4903456..4906785transposon protein, putative, Mariner sub-class
LOC_Os12g09360OsAffx.31660.2.S1_x_at10/1112+4907373..4909076expressed protein
LOC_Os12g09360OsAffx.31660.1.S1_at5/1112+4907373..4909076expressed protein
LOC_Os12g09360OsAffx.31660.3.S1_x_at4/1112+4907373..4909076expressed protein
LOC_Os12g09370OsAffx.19573.1.S1_at11/1112+4909942..4910623hypothetical protein
LOC_Os12g09380OsAffx.19574.1.S1_at11/1112+4919918..4920307hypothetical protein
LOC_Os12g09380OsAffx.19574.1.S1_x_at11/1112+4919918..4920307hypothetical protein
LOC_Os12g09390OsAffx.31661.1.S1_at11/1112+4921841..4923598hypothetical protein
LOC_Os12g09390OsAffx.31661.2.S1_at1/1112+4921841..4923598hypothetical protein
LOC_Os12g09400OsAffx.4856.1.S1_x_at1/1112+4924925..4929037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g09410OsAffx.4856.1.S1_x_at1/1112+4930687..4932183retrotransposon protein, putative, LINE subclass
LOC_Os12g09420Os.14491.2.S1_x_at1/1112+4932786..4936184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g09420Os.47463.1.S1_x_at1/1112+4932786..4936184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g09430OsAffx.26864.1.S1_at8/1112+4937526..4941050Transposable element protein, putative, Transposase_28
LOC_Os12g09440OsAffx.19575.1.S1_at10/1112+4943228..4945951hypothetical protein
LOC_Os12g09440Os.51185.2.S1_at1/1112+4943228..4945951hypothetical protein
LOC_Os12g09440OsAffx.17561.1.S1_x_at1/1112+4943228..4945951hypothetical protein
LOC_Os12g09440OsAffx.30217.1.S1_x_at1/1112+4943228..4945951hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19574.1.S1_at--847--6551Chr12:4920227..4920251 (25 bp)
GATTGGGGAAAACAGCTCCGACGAC
LOC_Os12g09380
OsAffx.19574.1.S1_at--125--3731Chr12:4920203..4920227 (25 bp)
CGGACGGGTTTCAGAGAGGCACAAA
LOC_Os12g09380
OsAffx.19574.1.S1_at--307--5751Chr12:4920201..4920225 (25 bp)
GACGGGTTTCAGAGAGGCACAAAAT
LOC_Os12g09380
OsAffx.19574.1.S1_at--37--6211Chr12:4920188..4920212 (25 bp)
GAGGCACAAAATAGGCTCGCCGAAC
LOC_Os12g09380
OsAffx.19574.1.S1_at--1065--2091Chr12:4920183..4920207 (25 bp)
ACAAAATAGGCTCGCCGAACTTCGG
LOC_Os12g09380
OsAffx.19574.1.S1_at--1147--3091Chr12:4920179..4920203 (25 bp)
AATAGGCTCGCCGAACTTCGGAGAA
LOC_Os12g09380
OsAffx.19574.1.S1_at--1145--10091Chr12:4920177..4920201 (25 bp)
TAGGCTCGCCGAACTTCGGAGAACT
LOC_Os12g09380
OsAffx.19574.1.S1_at--971--4211Chr12:4920169..4920193 (25 bp)
CCGAACTTCGGAGAACTCGGCAAGT
LOC_Os12g09380
OsAffx.19574.1.S1_at--844--2511Chr12:4920166..4920190 (25 bp)
AACTTCGGAGAACTCGGCAAGTCAA
LOC_Os12g09380
OsAffx.19574.1.S1_at--193--3651Chr12:4920164..4920188 (25 bp)
CTTCGGAGAACTCGGCAAGTCAAGG
LOC_Os12g09380
OsAffx.19574.1.S1_at--639--10351Chr12:4920124..4920148 (25 bp)
TTTTTGACTCTGTTAGGAACTCAAT
LOC_Os12g09380
Target Sequence 
GATTGGGGAAAACAGCTCCGACGACGGACGGGTTTCAGAGAGGCACAAAATAGGCTCGCCGAACTTCGGAGAACTCGGCA
AGTCAAGGAGGGGATTCTATATTTTTTTGACTCTGTTAGGAACTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis