Browse Element(s) Details


OsAffx.19753.1.S1_at

Description tigr:9640.m01964
TID=OsAffx.19753.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g198209/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19790OsAffx.15648.1.S1_at1/1112+11529979..11533771hypothetical protein
LOC_Os12g19800NANA12+11543651..11544386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19810OsAffx.14873.1.S1_at3/1112+11549274..11556321retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19810Os.45974.1.A1_at1/1112+11549274..11556321retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19820OsAffx.19753.1.S1_at9/1112+11557663..11558313retrotransposon, putative, centromere-specific
LOC_Os12g19830Os.40855.2.S1_x_at10/1112+11564348..11565343hypothetical protein
LOC_Os12g19830Os.40855.4.S1_x_at4/1112+11564348..11565343hypothetical protein
LOC_Os12g19830Os.40360.1.S1_x_at1/1112+11564348..11565343hypothetical protein
LOC_Os12g19830Os.40855.4.S1_at1/1112+11564348..11565343hypothetical protein
LOC_Os12g19840Os.40855.2.S1_x_at10/1112+11566359..11570473hypothetical protein
LOC_Os12g19840Os.40855.4.S1_x_at6/1112+11566359..11570473hypothetical protein
LOC_Os12g19840OsAffx.3900.1.S1_at5/1112+11566359..11570473hypothetical protein
LOC_Os12g19840Os.40855.4.S1_at2/1112+11566359..11570473hypothetical protein
LOC_Os12g19840Os.40360.1.S1_x_at1/1112+11566359..11570473hypothetical protein
LOC_Os12g19850NANA12+11571668..11572495hypothetical protein
LOC_Os12g19860OsAffx.19754.1.S1_at11/1112+11573253..11573882expressed protein
LOC_Os12g19870Os.26999.1.A1_at2/1112+11574561..11576807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19870OsAffx.828.1.S1_x_at1/1112+11574561..11576807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19880OsAffx.31816.1.S1_at11/1112+11580210..11580473hypothetical protein
LOC_Os12g19890OsAffx.31892.1.S1_x_at4/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19890OsAffx.31892.3.S1_at1/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19890OsAffx.6363.1.S1_at1/1112+11582991..11586515retrotransposon protein, putative, LINE subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19753.1.S1_at--953--4151Chr12:11558259..11558283 (25 bp)
CGCCGGTTGGATTCAGATTACAGGA
LOC_Os12g19820
OsAffx.19753.1.S1_at--361--10871Chr12:11558253..11558277 (25 bp)
TTGGATTCAGATTACAGGACAGCAC
LOC_Os12g19820
OsAffx.19753.1.S1_at--976--3391Chr12:11558234..11558258 (25 bp)
CAGCACCAACATCGGACGGTCTTCA
LOC_Os12g19820
OsAffx.19753.1.S1_at--576--3431Chr12:11558225..11558249 (25 bp)
CATCGGACGGTCTTCACAATTTCAT
LOC_Os12g19820
OsAffx.19753.1.S1_at--389--8111Chr12:11558221..11558245 (25 bp)
GGACGGTCTTCACAATTTCATGCGA
LOC_Os12g19820
OsAffx.19753.1.S1_at--509--3971Chr12:11558218..11558242 (25 bp)
CGGTCTTCACAATTTCATGCGATTT
LOC_Os12g19820
OsAffx.19753.1.S1_at--644--9691Chr12:11558212..11558236 (25 bp)
TCACAATTTCATGCGATTTCGGCGT
LOC_Os12g19820
OsAffx.19753.1.S1_at--258--10311NONE
TTTCATGCGATTTCGGCGTGCAAAT
NONE
OsAffx.19753.1.S1_at--217--191Chr12:11557765..11558221 (25 bp)
ATTTCGGCGTGCAAATGAGTGCCCT
LOC_Os12g19820
OsAffx.19753.1.S1_at--547--3991Chr12:11557758..11558214 (25 bp)
CGTGCAAATGAGTGCCCTCGTGGCA
LOC_Os12g19820
OsAffx.19753.1.S1_at--104--2291NONE
AAATGAGTGCCCTCGTGGCAGGGTT
NONE
Target Sequence 
CGCCGGTTGGATTCAGATTACAGGACAGCACCAACATCGGACGGTCTTCACAATTTCATGCGATTTCGGCGTGCAAATGA
GTGCCCTCGTGGCAGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis