Browse Element(s) Details


OsAffx.19754.1.S1_at

Description tigr:9640.m01967
TID=OsAffx.19754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1986011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19810OsAffx.14873.1.S1_at3/1112+11549274..11556321retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19810Os.45974.1.A1_at1/1112+11549274..11556321retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19820OsAffx.19753.1.S1_at9/1112+11557663..11558313retrotransposon, putative, centromere-specific
LOC_Os12g19830Os.40855.2.S1_x_at10/1112+11564348..11565343hypothetical protein
LOC_Os12g19830Os.40855.4.S1_x_at4/1112+11564348..11565343hypothetical protein
LOC_Os12g19830Os.40360.1.S1_x_at1/1112+11564348..11565343hypothetical protein
LOC_Os12g19830Os.40855.4.S1_at1/1112+11564348..11565343hypothetical protein
LOC_Os12g19840Os.40855.2.S1_x_at10/1112+11566359..11570473hypothetical protein
LOC_Os12g19840Os.40855.4.S1_x_at6/1112+11566359..11570473hypothetical protein
LOC_Os12g19840OsAffx.3900.1.S1_at5/1112+11566359..11570473hypothetical protein
LOC_Os12g19840Os.40855.4.S1_at2/1112+11566359..11570473hypothetical protein
LOC_Os12g19840Os.40360.1.S1_x_at1/1112+11566359..11570473hypothetical protein
LOC_Os12g19850NANA12+11571668..11572495hypothetical protein
LOC_Os12g19860OsAffx.19754.1.S1_at11/1112+11573253..11573882expressed protein
LOC_Os12g19870Os.26999.1.A1_at2/1112+11574561..11576807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19870OsAffx.828.1.S1_x_at1/1112+11574561..11576807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19880OsAffx.31816.1.S1_at11/1112+11580210..11580473hypothetical protein
LOC_Os12g19890OsAffx.31892.1.S1_x_at4/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19890OsAffx.31892.3.S1_at1/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19890OsAffx.6363.1.S1_at1/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19900NANA12+11587270..11593934retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19754.1.S1_at--7--8311Chr12:11573715..11573739 (25 bp)
GGCTTTCTACGCGTCCGTGATGTAC
LOC_Os12g19860
OsAffx.19754.1.S1_at--681--751Chr12:11573696..11573720 (25 bp)
ATGTACGGTGCCGTCTTCGGGCTCC
LOC_Os12g19860
OsAffx.19754.1.S1_at--562--9271Chr12:11573674..11573698 (25 bp)
TCCTGTCGATGGGAGCCGCGTTAGC
LOC_Os12g19860
OsAffx.19754.1.S1_at--55--631Chr12:11573633..11573657 (25 bp)
ATGCTCATCACATGGATCACCGTGT
LOC_Os12g19860
OsAffx.19754.1.S1_at--515--831Chr12:11573622..11573646 (25 bp)
ATGGATCACCGTGTTGGTGCTACTC
LOC_Os12g19860
OsAffx.19754.1.S1_at--10--7771Chr12:11573607..11573631 (25 bp)
GGTGCTACTCGCGTTCGCCGGAAAG
LOC_Os12g19860
OsAffx.19754.1.S1_at--158--9591Chr12:11573515..11573539 (25 bp)
TCTTGCTGCGCGAGGGCAACGCAGT
LOC_Os12g19860
OsAffx.19754.1.S1_at--983--1071Chr12:11573503..11573527 (25 bp)
AGGGCAACGCAGTCGCTGCGCTCTG
LOC_Os12g19860
OsAffx.19754.1.S1_at--792--4691Chr12:11573416..11573440 (25 bp)
GCGGCAGCTGATGTGACGCTTCCTG
LOC_Os12g19860
OsAffx.19754.1.S1_at--470--7371Chr12:11573404..11573428 (25 bp)
GTGACGCTTCCTGCAAAATTGTTCA
LOC_Os12g19860
OsAffx.19754.1.S1_at--198--9531Chr12:11573365..11573389 (25 bp)
TCTTTCAGTTAATATCCGTTTTGGG
LOC_Os12g19860
Target Sequence 
GGCTTTCTACGCGTCCGTGATGTACGGTGCCGTCTTCGGGCTCCTGTCGATGGGAGCCGCGTTAGCCGTGGCGGCGCCGG
CCATGCTCATCACATGGATCACCGTGTTGGTGCTACTCGCGTTCGCCGGAAAGCCGCGGAGGTCGCTGGTCGCAGAGGGG
CGGCGCGCCACGGCCGATATCGCGCGGCTCGCGCTCCGCGTCTTGCTGCGCGAGGGCAACGCAGTCGCTGCGCTCTGCGC
CGCCGCCAGCTTCGCGGCCCTCCTCCTCGGCCGCCGCGACGACGACCCGGCGGAGGGGAGCGGCAGCTGATGTGACGCTT
CCTGCAAAATTGTTCAATTCCATGTTTTTTTCTTTCAGTTAATATCCGTTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis