Browse Element(s) Details


OsAffx.19799.1.S1_at

Description tigr:9640.m02320
TID=OsAffx.19799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2435011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24310OsAffx.19798.1.S1_at11/1112+13872519..13873557hypothetical protein
LOC_Os12g24320Os.51787.1.S1_at11/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320Os.48426.1.A1_at5/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.25760.1.S1_x_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.31219.1.S1_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24330Os.57108.1.S1_at11/1112+13882818..13885562expressed protein
LOC_Os12g24340OsAffx.31862.1.S1_at11/1112+13888337..13889009hypothetical protein
LOC_Os12g24350OsAffx.19799.1.S1_at11/1112+13889667..13890262hypothetical protein
LOC_Os12g24364Os.45173.1.S1_x_at3/1112+13892665..13899322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24380OsAffx.31863.1.S1_at11/1112+13902675..13903589hypothetical protein
LOC_Os12g24390OsAffx.31864.1.S1_at11/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24390Os.9218.1.S1_at10/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24400OsAffx.30941.5.S1_x_at8/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.1.S1_x_at7/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.9.S1_x_at4/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.2.S1_x_at3/1112+13914749..13917908transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19799.1.S1_at--402--2971Chr12:13889697..13889721 (25 bp)
AATGGATCTGGTTCTCATTTGAGCC
LOC_Os12g24350
OsAffx.19799.1.S1_at--12--1231Chr12:13889734..13889758 (25 bp)
AGTTGAATGCTCACTCGTCCGCCGA
LOC_Os12g24350
OsAffx.19799.1.S1_at--527--7251Chr12:13889750..13889774 (25 bp)
GTCCGCCGACATCGCAATGGAGGAT
LOC_Os12g24350
OsAffx.19799.1.S1_at--307--6171Chr12:13889769..13889793 (25 bp)
GAGGATGTAGACACCGCACCAAGTT
LOC_Os12g24350
OsAffx.19799.1.S1_at--138--4111Chr12:13889783..13889807 (25 bp)
CGCACCAAGTTTGTTGAGTGACTCC
LOC_Os12g24350
OsAffx.19799.1.S1_at--421--6091Chr12:13889798..13889822 (25 bp)
GAGTGACTCCGACCTAGAGCTCGTT
LOC_Os12g24350
OsAffx.19799.1.S1_at--160--4311Chr12:13889810..13889834 (25 bp)
CCTAGAGCTCGTTGGTGATCGGGAA
LOC_Os12g24350
OsAffx.19799.1.S1_at--282--971Chr12:13889857..13889881 (25 bp)
AGGACCGGACATTTGCTCATAGCCA
LOC_Os12g24350
OsAffx.19799.1.S1_at--374--9991Chr12:13889876..13890112 (25 bp)
TAGCCAAGCCTATGATCCATCTGAT
LOC_Os12g24350
OsAffx.19799.1.S1_at--575--5071Chr12:13890170..13890194 (25 bp)
GCACCAATTTGCAGGAAACTCAGAA
LOC_Os12g24350
OsAffx.19799.1.S1_at--57--10431Chr12:13890205..13890229 (25 bp)
TTATAGTCCCACACTTAGGCTCATG
LOC_Os12g24350
Target Sequence 
AATGGATCTGGTTCTCATTTGAGCCGTCACCAAGACGAGTTGAATGCTCACTCGTCCGCCGACATCGCAATGGAGGATGT
AGACACCGCACCAAGTTTGTTGAGTGACTCCGACCTAGAGCTCGTTGGTGATCGGGAAATACAAGCCTACCGGATGCTCA
AGGACCGGACATTTGCTCATAGCCAAGCCTATGATCCATCTGATTTTCAGAAGATAATTTCCAGTTTTGAGAAAAACAGA
TTTTGGGAAGATATTTTTGGTGCACCAATTTGCAGGAAACTCAGAACTAATGACATTTATAGTCCCACACTTAGGCTCAT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis