Browse Element(s) Details


OsAffx.19816.1.S1_at

Description tigr:9640.m02399
TID=OsAffx.19816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2514011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25090Os.36283.1.S1_at11/1112+14408622..14409361expressed protein
LOC_Os12g25100OsAffx.10633.1.S1_at7/1112+14412283..14415749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25110OsAffx.31871.1.S1_at11/1112+14417761..14418874hypothetical protein
LOC_Os12g25110Os.45412.1.S1_at1/1112+14417761..14418874hypothetical protein
LOC_Os12g25120Os.10168.1.S1_at11/1112+14421204..14422231Histone H2A, putative, expressed
LOC_Os12g25130Os.55445.1.S1_at11/1112+14430672..14431393expressed protein
LOC_Os12g25140OsAffx.19816.1.S1_at11/1112+14432825..14433163hypothetical protein
LOC_Os12g25150NANA12+14435735..14437452retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25160OsAffx.19817.3.S1_at11/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25160OsAffx.19817.1.S1_x_at1/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25170Os.22842.1.S1_at11/1112+14447241..14448994NB-ARC domain containing protein, expressed
LOC_Os12g25180Os.8468.1.S1_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.8468.1.S1_s_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.35224.1.A1_x_at10/1112+14450578..14454081expressed protein
LOC_Os12g25180OsAffx.19818.1.S1_at1/1112+14450578..14454081expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19816.1.S1_at--976--8131Chr12:14433085..14433109 (25 bp)
GGAAAAACGGATAAAAGCTCATCAA
LOC_Os12g25140
OsAffx.19816.1.S1_at--1034--2691Chr12:14433071..14433095 (25 bp)
AAGCTCATCAAGTTTATTCAGTTTC
LOC_Os12g25140
OsAffx.19816.1.S1_at--164--4831Chr12:14433069..14433093 (25 bp)
GCTCATCAAGTTTATTCAGTTTCGA
LOC_Os12g25140
OsAffx.19816.1.S1_at--679--6811Chr12:14433064..14433084 (21 bp)
GTTTATTCAGTTTCGATCTGGCGGC
LOC_Os12g25140
OsAffx.19816.1.S1_at--259--10411Chr12:14432923..14433082 (25 bp)
TTATTCAGTTTCGATCTGGCGGCAG
LOC_Os12g25140
OsAffx.19816.1.S1_at--447--3391Chr12:14432901..14432925 (25 bp)
CAGCGTGCGTCAAGGTGGGTCGCAT
LOC_Os12g25140
OsAffx.19816.1.S1_at--614--8631Chr12:14432886..14432910 (25 bp)
TGGGTCGCATGGTGGCTTTGAATTT
LOC_Os12g25140
OsAffx.19816.1.S1_at--483--7231Chr12:14432883..14432907 (25 bp)
GTCGCATGGTGGCTTTGAATTTGAA
LOC_Os12g25140
OsAffx.19816.1.S1_at--7--5011Chr12:14432880..14432904 (25 bp)
GCATGGTGGCTTTGAATTTGAAAAC
LOC_Os12g25140
OsAffx.19816.1.S1_at--570--7531Chr12:14432875..14432899 (25 bp)
GTGGCTTTGAATTTGAAAACGGACT
LOC_Os12g25140
OsAffx.19816.1.S1_at--929--10491Chr12:14432863..14432887 (25 bp)
TTGAAAACGGACTTGGGTGATTATT
LOC_Os12g25140
Target Sequence 
GGAAAAACGGATAAAAGCTCATCAAGTTTATTCAGTTTCGATCTGGCGGCAGCGTGCGTCAAGGTGGGTCGCATGGTGGC
TTTGAATTTGAAAACGGACTTGGGTGATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis