Browse Element(s) Details


OsAffx.20034.1.S1_x_at

Description tigr:9640.m03870
TID=OsAffx.20034.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myb-like DNA-binding domain, SHAQKYF class, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3964011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39620Os.46182.1.S1_at11/1112+24421410..24425728Leucine Rich Repeat family protein, expressed
LOC_Os12g39630OsAffx.20033.1.S1_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39630Os.15247.1.S1_s_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39640Os.47453.1.A1_s_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.20034.1.S1_x_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640Os.47453.1.A1_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.16011.1.S1_at1/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39650Os.27347.1.S1_a_at4/1112+24445323..24449233expressed protein
LOC_Os12g39660Os.9632.1.S2_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39660Os.9632.1.S1_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39670OsAffx.32099.1.S1_at9/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.27541.1.A1_at2/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.50246.1.S2_at1/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.35524.1.S2_at1/1112+24458983..24467282hypothetical protein
LOC_Os12g39680OsAffx.20035.1.S1_at11/1112+24468227..24471462expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20034.1.S1_x_at--702--6651Chr12:24443493..24443517 (25 bp)
GTTGATGGCCTCACTAATGATGAAG
LOC_Os12g39640
OsAffx.20034.1.S1_x_at--337--8872Chr12:24443510..24443534 (25 bp)
TGATGAAGTCAAAAGCCACCTGCAG
LOC_Os12g39640
OsAffx.20034.1.S1_x_at--644--2651Chr12:24443522..24443665 (25 bp)
AAGCCACCTGCAGAAGTACCGGCTG
LOC_Os12g39640
OsAffx.20034.1.S1_x_at--543--9351Chr12:24443762..24443786 (25 bp)
TCGCAGCACAGCACATCGCAGTCTG
LOC_Os12g39640
OsAffx.20034.1.S1_x_at--1115--8711Chr12:24443817..24443841 (25 bp)
TGTCGTCGAGCCACGCCGTGTCAGT
LOC_Os12g39640
OsAffx.20034.1.S1_x_at--202--9612Chr12:24443936..24443960 (25 bp)
TCATCATCATCTTGAGCACCATTAA
LOC_Os12g39640
OsAffx.20034.1.S1_x_at--361--5091Chr12:24443951..24443975 (25 bp)
GCACCATTAATTAATTGTCTCCAGG
LOC_Os12g39640
OsAffx.20034.1.S1_x_at--640--4551Chr12:24443988..24444012 (25 bp)
GCAGTGACCGAAGAACTTAGGCCTA
LOC_Os12g39640
OsAffx.20034.1.S1_x_at--181--3671Chr12:24444003..24444027 (25 bp)
CTTAGGCCTATTTCTGTACAGTGGT
LOC_Os12g39640
OsAffx.20034.1.S1_x_at--451--3872Chr12:24444016..24444040 (25 bp)
CTGTACAGTGGTTGAGAGCTTTTTT
LOC_Os12g39640
OsAffx.20034.1.S1_x_at--293--6531Chr12:24444064..24444088 (25 bp)
GATTAAGTACGGGAGTTACCCATGT
LOC_Os12g39640
Target Sequence 
GTTGATGGCCTCACTAATGATGAAGTCAAAAGCCACCTGCAGAAGTACCGGCTGCACACGCGGCGGGCATCCGACGGCGG
TGATGGTGGCGGTGACCATCAGACGGTTGGCGGCCGTCTATGGCCGCTGCCACCGGAGCAATACACCACCTCGCAGCACA
GCACATCGCAGTCTGGCTCGCCGCAGGGCCCCCTCCAGCTCACCGTGTCGTCGAGCCACGCCGTGTCAGTGACCGCCGGC
GATAGCTGCGACGGCGGTGAGGAGGAAGAGGAGGACGGGAAGTCGGGGAGCTATAGCTGGGAGATGCAGAATGGGGCAAG
GGCATCATCATCATCTTGAGCACCATTAATTAATTGTCTCCAGGTGCTGCACAGCAGCAGTGACCGAAGAACTTAGGCCT
ATTTCTGTACAGTGGTTGAGAGCTTTTTTTGGGCTTTTTTTTTGGAGGATGAGATTAAGTACGGGAGTTACCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20034.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis