Browse Element(s) Details


OsAffx.20082.1.S1_at

Description tigr:9640.m04095
TID=OsAffx.20082.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g013308/11expressed protein
LOC_Os12g417601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein
LOC_Os05g01290Os.8540.1.S1_at2/115+171511..171720expressed protein
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein
LOC_Os05g01350OsAffx.31590.1.S1_at2/115+191915..195460retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01360Os.54311.1.S1_at11/115+197043..204340expressed protein
LOC_Os05g01370OsAffx.26676.1.S1_at11/115+205050..206078Leucine Rich Repeat family protein, expressed
LOC_Os05g01380OsAffx.4221.1.S1_x_at11/115+208835..209818Leucine Rich Repeat family protein, expressed
LOC_Os05g01390OsAffx.4222.1.S1_at11/115+210161..210799hypothetical protein
LOC_Os05g01400NANA5+212135..218060retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20082.1.S1_at--916--3751NONE
CTCATTCTCATTCTCATGTATGGTT
NONE
OsAffx.20082.1.S1_at--350--9531NONE
TCTCATGTATGGTTTTCTGCAGCAA
NONE
OsAffx.20082.1.S1_at--951--811Chr12:25840166..25840185 (20 bp)
ATGGTTTTCTGCAGCAACCGGTGCA
LOC_Os12g41760
OsAffx.20082.1.S1_at--70--7891Chr05:185815..185839 (25 bp)
GGTTTTGATCCTAAGAACATGGTTT
LOC_Os05g01330
OsAffx.20082.1.S1_at--1146--9971Chr05:185767..185791 (25 bp)
TAGCCCTCTATACTGAACCGATGAC
LOC_Os05g01330
OsAffx.20082.1.S1_at--904--1771Chr05:185751..185775 (25 bp)
ACCGATGACACTTGGTTTTGTACAA
LOC_Os05g01330
OsAffx.20082.1.S1_at--285--4891Chr05:185704..185728 (25 bp)
GCTTATGCTTTGATGATAGGCTGGA
LOC_Os05g01330
OsAffx.20082.1.S1_at--933--891Chr05:185687..185711 (25 bp)
AGGCTGGAATAATTTTTGACTGAAT
LOC_Os05g01330
OsAffx.20082.1.S1_at--369--8991Chr05:185667..185691 (25 bp)
TGAATGATGGCTGCAGAGTTGGATT
LOC_Os05g01330
OsAffx.20082.1.S1_at--933--6911Chr05:185610..185634 (25 bp)
GTATGATGACCTGTGTAACTTGAAG
LOC_Os05g01330
OsAffx.20082.1.S1_at--255--5311Chr05:185589..185613 (25 bp)
GAAGGTTTCTATTTGTGTGTGGGTA
LOC_Os05g01330
Target Sequence 
CTCATTCTCATTCTCATGTATGGTTTTCTGCAGCAACCGGTGCAAACTAAAGATGGCGGGATTCGGCAGCCTGGCACCCA
AGACCAAGAACNTNGTGGTGGCTGGAGGACTNTCTGCTTTCGTCCTNGGCGTGTATTACTACACCATGAGAGCGGTGGGA
GGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGNCATGAAGAAAAANGATGCTGGGAACTCATCCNCCGCGGG
ATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACTGATGACACTTGGTTTTGATCCTAAGAAC
ATGGTTTAGAATTGGCTCCATGTCCGCCTCTAGCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTC
GATACTAGGTTTTGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGGATTGCAGT
TTTAATTTTCTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAGGTTTCTATTTGTGTGTGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis