Browse Element(s) Details


OsAffx.20128.1.S1_at

Description gb:AY620416.1
DB_XREF= gi:47499875
GEN=GBP
TID=OsAffx.20128.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) clone P0638H11 small GTP-binding protein (GBP) mRNA, complete cds.
PROD=small GTP-binding protein
FL= gb:AY620416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g120907/11GTP-binding protein SAR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12040Os.27584.1.S1_at11/116+6451850..6453455mTERF family protein, expressed
LOC_Os06g12050OsAffx.27578.1.S1_at11/116+6457355..6458568mTERF family protein, expressed
LOC_Os06g12060Os.53799.1.S1_at11/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.19956.1.S1_at10/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.17014.1.S1_at1/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12070OsAffx.4807.1.S1_at11/116+6465718..6466994mTERF family protein, expressed
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed
LOC_Os06g12110Os.5964.1.S1_at11/116+6481367..6482824mTERF family protein, expressed
LOC_Os06g12120Os.17766.1.S1_at11/116+6483044..6487554BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g12130NANA6+6490223..6490714hypothetical protein
LOC_Os06g12140OsAffx.4808.1.S1_at10/116+6491885..6493715hypothetical protein
LOC_Os06g12140OsAffx.16999.1.S1_at2/116+6491885..6493715hypothetical protein
LOC_Os06g12150Os.56273.1.S1_at11/116+6494003..6496899Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os06g12160Os.18031.1.S1_at11/116+6502744..6513200AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048221biological_processrough ER to cis-Golgi vesicle-mediated transport
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005783cellular_componentendoplasmic reticulum
GO:0005829cellular_componentcytosol
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20128.1.S1_at--11--3731NONE
CTACTACGCCCAGGTTGATGCAGTA
NONE
OsAffx.20128.1.S1_at--618--1171Chr06:6477947..6477971 (25 bp)
AGTACATCAAGTAGAACATGGTAGA
LOC_Os06g12090
OsAffx.20128.1.S1_at--474--6951Chr06:6477957..6477981 (25 bp)
GTAGAACATGGTAGAGACTCAGAGC
LOC_Os06g12090
OsAffx.20128.1.S1_at--586--5991Chr06:6477970..6477994 (25 bp)
GAGACTCAGAGCATGTATCTATATG
LOC_Os06g12090
OsAffx.20128.1.S1_at--397--5931NONE
GAGCATGTATCTATATGCCCTCTTG
NONE
OsAffx.20128.1.S1_at--457--751NONE
ATGTATCTATATGCCCTCTTGTATC
NONE
OsAffx.20128.1.S1_at--187--451NONE
ATCTATATGCCCTCTTGTATCAATT
NONE
OsAffx.20128.1.S1_at--141--611Chr06:6477995..6478015 (21 bp)
ATGCCCTCTTGTATCAATTAATCAA
LOC_Os06g12090
OsAffx.20128.1.S1_at--563--3071Chr06:6478010..6478043 (25 bp)
AATCAAGACATTTCATATGAGCATG
LOC_Os06g12090
OsAffx.20128.1.S1_at--821--3571Chr06:6478033..6478056 (24 bp)
CATATGAGCATGATTTCACAAAGAG
LOC_Os06g12090
OsAffx.20128.1.S1_at--274--9691Chr06:6478047..6478071 (25 bp)
TCACAAAGAGATTCTATGATTGCCT
LOC_Os06g12090
Target Sequence 
CTACTACGCCCAGGTTGATGCAGTAGTTTACGTGGTGGACGCTGCCGACAGGTGCCGGTTCGCCGAGTCGAAGATGGAGC
TGGACGCCCTCCTGTCTGACGACGCGCTCGCTGGCGTGCCGTTCCTCGTCCTCGGGAACAAGATAGACATCCCGTACGCG
GTGCCCGAGCAGGAGCTGTGCTACTACCTCGGGCTCACCGGCCTCACCACCGGCAAGGGCAATGTCAACCTTGCAGGAAC
CGGAGTGCGGCCGGTCGAGGTCTTCATGTGCAGCGTCGTCCGCCGGATGGGCTACGGCGATGGCTTCANGTGGATGTCAC
AGTACATCAAGTAGAACATGGTAGAGACTCAGAGCATGTATCTATATGCCCTCTTGTATCAATTAATCAAGACATTTCAT
ATGAGCATGATTTCACAAAGAGATTCTATGATTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis