Browse Element(s) Details


OsAffx.20201.1.S1_at

Description tigr:9638.m03293
TID=OsAffx.20201.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative nodulin-26
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3692410/11aquaporin NIP5.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36870Os.3011.1.S1_at11/1110+19421965..19425476SH3 domain-containing protein 3, putative, expressed
LOC_Os10g36880Os.38394.1.S1_at11/1110+19427099..19438211Kinesin heavy chain, putative, expressed
LOC_Os10g36900NANA10+19445840..19446777hypothetical protein
LOC_Os10g36924OsAffx.27508.100.S1_s_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.46645.1.S1_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_x_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.5393.1.S1_at3/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36950Os.11620.1.S1_a_at11/1110+19471354..19474102IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os10g36960Os.46643.1.S1_x_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960Os.46643.1.S1_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.2.S1_x_at4/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.3.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.1.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.4.S1_x_at1/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36966OsAffx.7975.1.S1_at11/1110+19476908..19478454hypothetical protein
LOC_Os10g36972NANA10+19479494..19479922hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20201.1.S1_at--507--4491Chr10:19450081..19450105 (25 bp)
GCCGTGACGACCATCATCCTGTCGA
LOC_Os10g36924
OsAffx.20201.1.S1_at--845--8931Chr10:19450077..19450101 (25 bp)
TGACGACCATCATCCTGTCGACGGG
LOC_Os10g36924
OsAffx.20201.1.S1_at--762--9311Chr10:19449990..19450014 (25 bp)
TCCCGTGGCTGCAGGTCCCGGCGTA
LOC_Os10g36924
OsAffx.20201.1.S1_at--520--4911Chr10:19449930..19449954 (25 bp)
GCTTCGCCCTCAAGGGCGTCTTCCA
LOC_Os10g36924
OsAffx.20201.1.S1_at--992--531NONE
ATCGCCGGGCCGACGACAGGAGGGT
NONE
OsAffx.20201.1.S1_at--1046--8471Chr10:19449013..19449037 (25 bp)
TGGCGGCGGGCAACTACCGGCAGCT
LOC_Os10g36924
OsAffx.20201.1.S1_at--134--4271Chr10:19448997..19449021 (25 bp)
CCGGCAGCTGTGGATATACCTGATC
LOC_Os10g36924
OsAffx.20201.1.S1_at--881--1611Chr10:19448992..19449016 (25 bp)
AGCTGTGGATATACCTGATCGCGCC
LOC_Os10g36924
OsAffx.20201.1.S1_at--189--8671Chr10:19448989..19449013 (25 bp)
TGTGGATATACCTGATCGCGCCGAC
LOC_Os10g36924
OsAffx.20201.1.S1_at--1082--8551Chr10:19448987..19449011 (25 bp)
TGGATATACCTGATCGCGCCGACGC
LOC_Os10g36924
OsAffx.20201.1.S1_at--853--8731Chr10:19448938..19448962 (25 bp)
TGTACACGGCGGTGAAGCTCCGCGA
LOC_Os10g36924
Target Sequence
GCCGTGACGACCATCATCCTGTCGACGGGGCACATCTCCGGCGCCCACCTCAACCCGTCGCTCACCATCGCCTTCGCCGC
GCTCCGCCACTTCCCGTGGCTGCAGGTCCCGGCGTACGTCGCCGTCCAGGTGCTCGGCTCCATCTGCGCCGGCTTCGCCC
TCAAGGGCGTCTTCCACCCCTTCCTCTCCGGCGGCGTCACCGTCCCCGACCCCACCATCTCCACCGCCCAGGCCTTCTTC
ACCGAGTTCATCATCACCTTCAACCTCCTCTTCGTCGTCACCGCCGTCGCCACCGACACCCGCGCCGTCGGCGAGCTCGC
CGGCATCGCCGTCGGCGCCGCCGTCACCCTCAACATCCTCATCGCCGGGCCGACGACAGGAGGGTCGATGAACCCGGTGA
GGACGCTGGGGCCGGCGGTGGCGGCGGGCAACTACCGGCAGCTGTGGATATACCTGATCGCGCCGACGCTGGGCGCGGTC
GCCGGCGCCGGCGTGTACACGGCGGTGAAGCTCCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis