Browse Element(s) Details


OsAffx.20242.3.S1_x_at

Description tigr:9638.m02998
TID=OsAffx.20242.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative nodulin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3413011/11nodulin, putative
LOC_Os10g341501/11nodulin, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34078OsAffx.29731.1.S1_at11/1110+17858731..17860621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34090OsAffx.20244.1.S1_at11/1110+17866622..17869458hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_x_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34120Os.46785.2.S1_x_at11/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.30226.2.S1_x_at2/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.442.1.S1_x_at1/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34130OsAffx.20242.3.S1_x_at11/1110+17884950..17888169nodulin, putative
LOC_Os10g34130OsAffx.20242.1.S1_x_at1/1110+17884950..17888169nodulin, putative
LOC_Os10g34140OsAffx.18511.1.S1_at11/1110+17889881..17890612hypothetical protein
LOC_Os10g34150OsAffx.20242.1.S1_x_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.1.S1_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.3.S1_x_at1/1110+17895693..17897696nodulin, putative
LOC_Os10g34170Os.21367.1.S1_at11/1110+17902051..17906905Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os10g34180Os.7424.2.S1_a_at11/1110+17911049..17913835Transcription factor BTF3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20242.3.S1_x_at--349--5971Chr10:17885924..17885948 (25 bp)
GAGAAGCTCAGCAAGGCCACCGTCC
LOC_Os10g34130
OsAffx.20242.3.S1_x_at--490--4012Chr10:17896576..17896596 (21 bp)
CGTCCAGTACGAGACACAGGTGCAA
LOC_Os10g34150
OsAffx.20242.3.S1_x_at--1087--4131Chr10:17885383..17885407 (25 bp)
CGCTGTACGACAGGCAGATGGCAGC
LOC_Os10g34130
OsAffx.20242.3.S1_x_at--510--1831Chr10:17885356..17885380 (25 bp)
ACGCGACGCTGTTCGAGCAGGTGAA
LOC_Os10g34130
OsAffx.20242.3.S1_x_at--582--3911Chr10:17885304..17885328 (25 bp)
CGGCGCCAAGTTCTTCGAGCAGAAG
LOC_Os10g34130
OsAffx.20242.3.S1_x_at--18--1671Chr10:17885147..17885171 (25 bp)
AGCCTCATGATCGACGGCGGCGTGT
LOC_Os10g34130
OsAffx.20242.3.S1_x_at--557--8751Chr10:17885125..17885149 (25 bp)
TGTACGAGGAGGTCGCGCGCGTCAA
LOC_Os10g34130
OsAffx.20242.3.S1_x_at--1152--8911Chr10:17885089..17885113 (25 bp)
TGAGCGGCATCCAGCCCAAGATCAG
LOC_Os10g34130
OsAffx.20242.3.S1_x_at--149--1671Chr10:17885077..17885101 (25 bp)
AGCCCAAGATCAGCATCAGGAGCGG
LOC_Os10g34130
OsAffx.20242.3.S1_x_at--826--3251Chr10:17885040..17885064 (25 bp)
CAACGCCGGTGCTAGCAGCGCAGGC
LOC_Os10g34130
OsAffx.20242.3.S1_x_at--325--4711Chr10:17884997..17885021 (25 bp)
GCGGCCGACGTGTACGACATGCTGC
LOC_Os10g34130
Target Sequence 
GAGAAGCTCAGCAAGGCCACCGTCCAGTACGAGACACAGGTGCAAGATTCAAACGCGGCGCTGTACGACAGGCAGATGGC
AGCGGACGCGACGCTGTTCGAGCAGGTGAAGTCGGCGGAGGCGCGCAAGGCGCAGGCCGGCGCCAAGTTCTTCGAGCAGA
AGCTGGCCGAGGACGCGAGGCTGTACGCGAGGCAGCGGGAGGCGGAGGCGCTGGCCGGGGTGGGCAGGGCCAAGGCGGAG
CTCGTGGCGTCCATGCTCCAGGAGCTCGGCGGCGACCACGGCGCGCTCCGGGACAGCCTCATGATCGACGGCGGCGTGTA
CGAGGAGGTCGCGCGCGTCAACGCCAGCGCGATGAGCGGCATCCAGCCCAAGATCAGCATCAGGAGCGGCGCCGGCGGCG
CCAACGCCGGTGCTAGCAGCGCAGGCGCGGTGCAGCAGGTGGCGGCGGCCGACGTGTACGACATGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20242.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis