Browse Element(s) Details


OsAffx.20253.1.S1_x_at

Description tigr:9638.m02923
TID=OsAffx.20253.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative protoporphyrinogen oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g183202/11Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein
LOC_Os01g18340NANA1+10300522..10300989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18350OsAffx.11095.1.S1_at11/111+10304895..10305419hypothetical protein
LOC_Os01g18360Os.18169.2.S1_x_at11/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.2.S1_at10/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.1.S1_at8/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
GO:0004729molecular_functionprotoporphyrinogen oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20253.1.S1_x_at--16--2131Chr10:17271839..17271863 (25 bp)
ACAGGGCGCGCTCGGTGGATAGCGG
NONE
OsAffx.20253.1.S1_x_at--620--4571Chr10:17271846..17271870 (25 bp)
GCGCTCGGTGGATAGCGGGCTCAAG
NONE
OsAffx.20253.1.S1_x_at--144--1631Chr10:17271859..17271883 (25 bp)
AGCGGGCTCAAGGACGACCTCGTGT
NONE
OsAffx.20253.1.S1_x_at--1147--8051Chr10:17271863..17271887 (25 bp)
GGCTCAAGGACGACCTCGTGTTCGG
NONE
OsAffx.20253.1.S1_x_at--282--1831Chr10:17271896..17271920 (25 bp)
ACGCGCCGCGGTTTGTGCTGTGGGA
NONE
OsAffx.20253.1.S1_x_at--633--2653Chr10:17271925..17271949 (25 bp)
AAGCTAAGGCCGGTGCCGTCCAAGC
NONE
OsAffx.20253.1.S1_x_at--1141--9171Chr10:17271959..17271983 (25 bp)
TGCCGTTCTTCAACCTCATGAGCAT
NONE
OsAffx.20253.1.S1_x_at--270--9633Chr10:17271974..17271998 (25 bp)
TCATGAGCATCCCCGGCAAGCTCAG
NONE
OsAffx.20253.1.S1_x_at--687--3214Chr10:17272080..17272104 (25 bp)
CAAGGATCCCCTCCCGGAGCAGGAG
NONE
OsAffx.20253.1.S1_x_at--697--4551NONE
GGTCGCCCGCGGAGGCCGAGAGGTA
NONE
OsAffx.20253.1.S1_x_at--1159--8411Chr10:17274331..17274355 (25 bp)
GGCCTCAGCGGTGAGATTAGCGGCA
NONE
Target Sequence 
ACAGGGCGCGCTCGGTGGATAGCGGGCTCAAGGACGACCTCGTGTTCGGGGACCCCAACGCGCCGCGGTTTGTGCTGTGG
GAGGGGAAGCTAAGGCCGGTGCCGTCCAAGCCCGGCGACCTGCCGTTCTTCAACCTCATGAGCATCCCCGGCAAGCTCAG
GGCCGGCCTCGGCGTGCTCGGCATTCGACCACCACCCCCTTCTGATCCCTCCGCCACCGGCGGCAACATCCCCGTCGGCC
GCAAGGATCCCCTCCCGGAGCAGGAGCCCGTCCCGGAACCTGCCCCCATCTCCCGCCGTGGTCGCCCGCGGAGGCCGAGA
GGTAGCGGCTGTGGTGGCCTCAGCGGTGAGATTAGCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20253.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis