Browse Element(s) Details


OsAffx.20341.1.S1_at

Description tigr:9638.m02405
TID=OsAffx.20341.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g284009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28340Os.10942.1.S1_a_at11/1110+14416706..14420777HSF-type DNA-binding domain containing protein, expressed
LOC_Os10g28350Os.4766.1.S1_at10/1110+14422575..144249281,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28360Os.34459.1.S1_at11/1110+14427730..144303661,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28370OsAffx.30569.1.S1_x_at11/1110+14434249..14435588Chlorophyllase family protein, expressed
LOC_Os10g28380OsAffx.30570.1.S1_at11/1110+14438455..14439908hypothetical protein
LOC_Os10g28380OsAffx.20341.1.S1_x_at1/1110+14438455..14439908hypothetical protein
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein
LOC_Os10g28420OsAffx.6794.1.S1_x_at11/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28420OsAffx.25518.1.S1_x_at1/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28430OsAffx.6795.1.S1_at11/1110+14460764..14461213hypothetical protein
LOC_Os10g28440Os.46851.1.S1_x_at11/1110+14468747..14470955Sulfate transporter 3.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20341.1.S1_at--814--9111Chr10:14446389..14446413 (25 bp)
TGCTGCTCGGTGTGGTCGCCACCGT
LOC_Os10g28400
OsAffx.20341.1.S1_at--488--7231Chr10:14446366..14446390 (25 bp)
GTCGCCGCCGGTGAGTGCAACGACG
LOC_Os10g28400
OsAffx.20341.1.S1_at--1080--2571Chr10:14446348..14446372 (25 bp)
AACGACGACGAAGAACTTGCACGCC
LOC_Os10g28400
OsAffx.20341.1.S1_at--1062--5771Chr10:14446345..14446369 (25 bp)
GACGACGAAGAACTTGCACGCCGGC
LOC_Os10g28400
OsAffx.20341.1.S1_at--594--5371NONE
GAAGAACTTGCACGCCGGCCTTGCG
NONE
OsAffx.20341.1.S1_at--37--4491NONE
GCCGGCCTTGCGTTGCGGTCAACTG
NONE
OsAffx.20341.1.S1_at--136--3631Chr10:14445279..14445303 (25 bp)
CTTGCGTTGCGGTCAACTGCGGGCC
LOC_Os10g28400
OsAffx.20341.1.S1_at--1141--6171Chr10:14445235..14445259 (25 bp)
GAGGAAGGGTTCAGCTACCACTGCG
LOC_Os10g28400
OsAffx.20341.1.S1_at--511--2891Chr10:14445231..14445255 (25 bp)
AAGGGTTCAGCTACCACTGCGCCTG
LOC_Os10g28400
OsAffx.20341.1.S1_at--869--3231Chr10:14445058..14445182 (25 bp)
CAAGAATTGTGCATTCGGCAAGGAC
LOC_Os10g28400
OsAffx.20341.1.S1_at--34--5211Chr10:14445055..14445141 (25 bp)
GAATTGTGCATTCGGCAAGGACTGC
LOC_Os10g28400
Target Sequence 
TGCTGCTCGGTGTGGTCGCCACCGTCGCCGCCGGTGAGTGCAACGACGACGAAGAACTTGCACGCCGGCCTTGCGTTGCG
GTCAACTGCGGGCCGGGAGGGCAGCGCGTGAAGGAGGAAGGGTTCAGCTACCACTGCGCCTGCTCGCCGGGATTCGTCAA
CATGCTCAACCTCACCGAGCTCCCCTGCATCAAGAATTGTGCATTCGGCAAGGACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis