Browse Element(s) Details


OsAffx.20519.1.S1_at

Description tigr:9638.m01562
TID=OsAffx.20519.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g187009/11hypothetical protein
LOC_Os02g061701/11expressed protein
LOC_Os04g222701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18670Os.2741.4.S1_x_at3/1110+9150549..9156702retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18700OsAffx.20519.1.S1_at9/1110+9170420..9173673hypothetical protein
LOC_Os10g18700Os.38286.1.S1_at7/1110+9170420..9173673hypothetical protein
LOC_Os10g18700OsAffx.20519.2.S1_at5/1110+9170420..9173673hypothetical protein
LOC_Os10g18700OsAffx.505.1.S1_at1/1110+9170420..9173673hypothetical protein
LOC_Os10g18704OsAffx.21885.1.S1_at2/1110+9175594..9176068hypothetical protein
LOC_Os10g18710OsAffx.16467.1.S1_at6/1110+9181256..9182327hypothetical protein
LOC_Os10g18710Os.26886.2.S1_s_at3/1110+9181256..9182327hypothetical protein
LOC_Os10g18710Os.26886.6.S1_s_at2/1110+9181256..9182327hypothetical protein
LOC_Os10g18720NANA10+9182526..9184797hypothetical protein
LOC_Os10g18730Os.24831.1.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_s_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.4.S1_x_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18740Os.26886.1.S1_x_at3/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18740Os.26886.3.S1_x_at1/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20519.1.S1_at--655--1751NONE
ACCTCGAGGACCAGGCTTCTATGCA
NONE
OsAffx.20519.1.S1_at--48--6191Chr10:9170732..9170999 (25 bp)
GAGGACCAGGCTTCTATGCATCTAC
LOC_Os10g18700
OsAffx.20519.1.S1_at--577--911Chr10:9170982..9171006 (25 bp)
AGGCTTCTATGCATCTACAGGTTTC
LOC_Os10g18700
OsAffx.20519.1.S1_at--938--631Chr10:9170990..9171014 (25 bp)
ATGCATCTACAGGTTTCTGTAATTG
LOC_Os10g18700
OsAffx.20519.1.S1_at--659--3171Chr10:9171565..9171584 (20 bp)
AATTGATAGACTTCAGGAATGCTCT
LOC_Os10g18700
OsAffx.20519.1.S1_at--1044--9012Chr10:9171632..9171656 (25 bp)
TGCAACCCCAGCGAGGCAGGAGGAT
LOC_Os10g18700
OsAffx.20519.1.S1_at--617--5012Chr10:9171647..9171976 (25 bp)
GCAGGAGGATGTTGTCCAGTTCATT
LOC_Os10g18700
OsAffx.20519.1.S1_at--696--6271Chr10:9171654..9172107 (25 bp)
GATGTTGTCCAGTTCATTGGGTGGA
LOC_Os10g18700
OsAffx.20519.1.S1_at--702--8271NONE
GGCATCGATCGGTTAAACAACGGAA
NONE
OsAffx.20519.1.S1_at--1126--8571Chr10:9173538..9173562 (25 bp)
TGGTATCATGCCTAGAAATAGGGCT
LOC_Os10g18700
OsAffx.20519.1.S1_at--480--9191Chr10:9173546..9173570 (25 bp)
TGCCTAGAAATAGGGCTGTCAACGA
LOC_Os10g18700
Target Sequence 
ACCTCGAGGACCAGGCTTCTATGCATCTACAGGTTTCTGTAATTGATAGACTTCAGGAATGCTCTGAATTTGTGGAGTTT
TCTGCACCTCAGCTGACGATCATGGGGGAGGCTGCAACCCCAGCGAGGCAGGAGGATGTTGTCCAGTTCATTGGGTGGAG
CTTTCTCTTGTGGTGCTTTTGCCTGCCATGGCAAGGCCAGCAAGATGGGATGAGGCTTCAGCTGGCTAGTGGGGATGGAG
ATGAAATCAGAAATTTACTACTTTTAATAATCAGCGTCGTCGGCCCTGATCTACATTGCTATATTAGTGCTGGCATCGAT
CGGTTAAACAACGGAAATGAAAAAAATGGTATCATGCCTAGAAATAGGGCTGTCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis