Browse Element(s) Details


OsAffx.20519.2.S1_at

Description tigr:9632.m02055
TID=OsAffx.20519.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2227011/11expressed protein
LOC_Os10g187005/11hypothetical protein
LOC_Os02g061704/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22210OsAffx.26093.1.S1_at11/114+12560644..12562194SCP-like extracellular protein
LOC_Os04g22220Os.57208.1.S1_at11/114+12563861..12564567SCP-like extracellular protein, expressed
LOC_Os04g22230OsAffx.26094.1.S1_at11/114+12566808..12567374SCP-like extracellular protein
LOC_Os04g22240OsAffx.3855.1.S1_at11/114+12573097..12578028transcription factor, putative, expressed
LOC_Os04g22250NANA4+12582271..12582507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22260OsAffx.13919.1.S1_at11/114+12583677..12583895hypothetical protein
LOC_Os04g22270OsAffx.20519.2.S1_at11/114+12584869..12587531expressed protein
LOC_Os04g22270Os.38286.1.S1_at10/114+12584869..12587531expressed protein
LOC_Os04g22270OsAffx.20519.1.S1_at1/114+12584869..12587531expressed protein
LOC_Os04g22280OsAffx.3857.1.S1_x_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22280OsAffx.3857.1.S1_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22290OsAffx.28610.3.S1_at11/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_x_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_x_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.4.S1_x_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22290Os.4760.1.S1_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22300Os.32374.2.S1_x_at4/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.2.S1_at3/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.3.S1_x_at2/114+12605742..12607406hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_x_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22330OsAffx.13920.1.S1_at11/114+12610433..12611011SCP-like extracellular protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20519.2.S1_at--768--9372Chr10:9170730..9170754 (25 bp)
TCGAGGACCAGGTACGCCGCAGCCG
LOC_Os10g18700
OsAffx.20519.2.S1_at--177--7172Chr10:9170763..9170787 (25 bp)
GTCCCCACGGGAATTCTTCCTTCAG
LOC_Os10g18700
OsAffx.20519.2.S1_at--653--1192Chr04:12585481..12585505 (25 bp)
AGTTTTTTATTGTGACTGCCTAAGC
LOC_Os04g22270
OsAffx.20519.2.S1_at--132--5734Chr10:9170799..9170823 (25 bp)
GACTGCCTAAGCTTGGAGAGCATCT
LOC_Os10g18700
OsAffx.20519.2.S1_at--775--8052Chr04:12585508..12585532 (25 bp)
GGAGAGCATCTCAATTTCTGTTGAA
LOC_Os04g22270
OsAffx.20519.2.S1_at--98--10612Chr10:9170828..9170852 (25 bp)
TTCTGTTGAAACACTTCAGGGAAGC
LOC_Os10g18700
OsAffx.20519.2.S1_at--957--7611Chr04:12585541..12585565 (25 bp)
GGGAAGCATTTAGCTCTCAGAGCAT
LOC_Os04g22270
OsAffx.20519.2.S1_at--4--5932Chr04:12585560..12585584 (25 bp)
GAGCATTCATGAGACTTCCATCTAT
LOC_Os04g22270
OsAffx.20519.2.S1_at--105--1411Chr04:12585571..12585595 (25 bp)
AGACTTCCATCTATAATCCTACTAA
LOC_Os04g22270
OsAffx.20519.2.S1_at--266--9771Chr04:12585584..12585608 (25 bp)
TAATCCTACTAAACTTCTGGCTGGT
LOC_Os04g22270
OsAffx.20519.2.S1_at--664--9453Chr10:9170904..9170928 (25 bp)
TCTGGCTGGTTCGTTAGTTCTATGT
LOC_Os10g18700
Target Sequence 
TCGAGGACCAGGTACGCCGCAGCCGCTCGACTCGTCCCCACGGGAATTCTTCCTTCAGTTTTTTATTGTGACTGCCTAAG
CTTGGAGAGCATCTCAATTTCTGTTGAAACACTTCAGGGAAGCATTTAGCTCTCAGAGCATTCATGAGACTTCCATCTAT
AATCCTACTAAACTTCTGGCTGGTTCGTTAGTTCTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20519.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis