Browse Element(s) Details


OsAffx.20854.1.S1_at

Description tigr:9636.m00562
TID=OsAffx.20854.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g062907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06240Os.11238.1.S1_at11/118+3432104..3435526Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g06250Os.7243.1.S1_s_at11/118+3437118..3440602GMFP4, putative, expressed
LOC_Os08g06260OsAffx.16851.1.S1_x_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06260OsAffx.16851.1.S1_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_x_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06280Os.40426.1.S1_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.2.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.1.S1_s_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.40426.1.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280OsAffx.12663.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.11239.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06290OsAffx.20854.1.S1_at7/118+3458359..3459958hypothetical protein
LOC_Os08g06300Os.43567.1.S1_x_at7/118+3467543..3469395transposon protein, putative, unclassified
LOC_Os08g06300Os.38172.1.S1_x_at3/118+3467543..3469395transposon protein, putative, unclassified
LOC_Os08g06300Os.53217.1.S1_x_at2/118+3467543..3469395transposon protein, putative, unclassified
LOC_Os08g06310OsAffx.22848.4.S1_at2/118+3471716..3477665retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g06310OsAffx.22848.4.S1_x_at1/118+3471716..3477665retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20854.1.S1_at--1089--1311Chr08:3458390..3458414 (25 bp)
AGAGGAGGCCACAGCCGTCGGAGTC
LOC_Os08g06290
OsAffx.20854.1.S1_at--28--4251Chr08:3458404..3458428 (25 bp)
CCGTCGGAGTCCACACGCTGCAGGA
LOC_Os08g06290
OsAffx.20854.1.S1_at--127--8431Chr08:3458449..3458473 (25 bp)
GGCCGTGCGCGCGAAAGAAGGAATG
LOC_Os08g06290
OsAffx.20854.1.S1_at--399--871NONE
ATGGCGGTCGTGTAGTGGCCATTCT
NONE
OsAffx.20854.1.S1_at--1161--9411NONE
TCGTGTAGTGGCCATTCTTCTGAAA
NONE
OsAffx.20854.1.S1_at--1016--7431NONE
GTGTAGTGGCCATTCTTCTGAAAAT
NONE
OsAffx.20854.1.S1_at--825--6931NONE
GTAGTGGCCATTCTTCTGAAAATTC
NONE
OsAffx.20854.1.S1_at--738--7551Chr08:3459069..3459091 (23 bp)
GTGGCCATTCTTCTGAAAATTCTCA
LOC_Os08g06290
OsAffx.20854.1.S1_at--653--3151Chr08:3459084..3459108 (25 bp)
AATTCTCAATTGCATCTATTTTCAT
LOC_Os08g06290
OsAffx.20854.1.S1_at--1130--9531Chr08:3459098..3459122 (25 bp)
TCTATTTTCATTTACCTCACCAAAG
LOC_Os08g06290
OsAffx.20854.1.S1_at--125--10471Chr08:3459109..3459133 (25 bp)
TTACCTCACCAAAGAATCAAAAATG
LOC_Os08g06290
Target Sequence 
AGAGGAGGCCACAGCCGTCGGAGTCCACACGCTGCAGGAGATTGACGGCGGCCGGCGGCGGCCGTGCGCGCGAAAGAAGG
AATGGAGATGGCGGTCGTGTAGTGGCCATTCTTCTGAAAATTCTCAATTGCATCTATTTTCATTTACCTCACCAAAGAAT
CAAAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis