Browse Element(s) Details


OsAffx.20858.5.S1_x_at

Description tigr:9631.m04505
TID=OsAffx.20858.5
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0849011/11hypothetical protein
LOC_Os03g4643011/11hypothetical protein
LOC_Os02g474809/11hypothetical protein
LOC_Os02g264908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08460Os.27659.1.S1_x_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460OsAffx.10965.1.S1_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.46982.1.A1_at7/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.36817.1.S1_at1/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08470Os.8113.1.S1_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08470Os.8113.2.S1_x_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08480NANA1+4184295..4188517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g08490OsAffx.20858.5.S1_x_at11/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.1.S1_x_at5/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.4.S1_x_at3/111+4193739..4195635hypothetical protein
LOC_Os01g08500Os.11575.2.S1_a_at11/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08500Os.11575.4.S1_x_at11/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08500Os.11575.3.S1_x_at8/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08510Os.36975.3.S1_x_at11/111+4205373..4210104MAR binding filament-like protein 1, putative, expressed
LOC_Os01g08520Os.23583.1.S1_at11/111+4211840..4214349expressed protein
LOC_Os01g08520Os.23583.2.S1_x_at11/111+4211840..4214349expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20858.5.S1_x_at--1026--5553Chr03:26212880..26212904 (25 bp)
GAAAGCCCTTTCAATTCCTTCACTG
LOC_Os03g46430
OsAffx.20858.5.S1_x_at--296--7834Chr03:26212919..26212943 (25 bp)
GGTCACAATCTAAGTGGCATGATAA
LOC_Os03g46430
OsAffx.20858.5.S1_x_at--835--2533Chr03:26212948..26212972 (25 bp)
AAGCAAATAACATCCCAGAAACCCT
LOC_Os03g46430
OsAffx.20858.5.S1_x_at--635--8693Chr03:26212972..26212996 (25 bp)
TGTGCCACCAACAGACAGAAGCCAA
LOC_Os03g46430
OsAffx.20858.5.S1_x_at--182--5433Chr03:26212989..26213013 (25 bp)
GAAGCCAAGCACAGATGGTTCAGCA
LOC_Os03g46430
OsAffx.20858.5.S1_x_at--56--2774Chr03:26213081..26213105 (25 bp)
AAGAGCCAAAGAGACCGATGGGTAA
LOC_Os03g46430
OsAffx.20858.5.S1_x_at--366--6654Chr03:26213124..26213148 (25 bp)
GTTGAGGCGTGGTGAAACATGCACA
LOC_Os03g46430
OsAffx.20858.5.S1_x_at--226--2514Chr03:26213139..26213163 (25 bp)
AACATGCACAGATGCTTTTGATCAT
LOC_Os03g46430
OsAffx.20858.5.S1_x_at--901--9074Chr03:26213151..26213175 (25 bp)
TGCTTTTGATCATTTGTGGGAGAAA
LOC_Os03g46430
OsAffx.20858.5.S1_x_at--190--6034Chr03:26213215..26213239 (25 bp)
GAGAGGCACCAAAAGTCATATGAAC
LOC_Os03g46430
OsAffx.20858.5.S1_x_at--440--2974Chr03:26213337..26213361 (25 bp)
AATGGACATTTCTTCCAAGCCTCTC
LOC_Os03g46430
Target Sequence 
GAAAGCCCTTTCAATTCCTTCACTGTTGGNCTCTCTTGCGGTCACAATCTAAGTGGCATGATAAGATGAAGCAAATAACA
TCCCAGAAACCCTGTGCCACCAACAGACAGAAGCCAAGCACAGATGGTTCAGCAAAAGCTANACCCACAAATGATGAAAC
TACCAATCATGTTGGTGAAGATAATGAACCTACAGAGACNGAAGAGCCAAAGAGACCGATGGGTAAGAAGAGAGCTAAAG
AGCAGTTGAGGCGTGGTGAAACATGCACAGATGCTTTTGATCATTTGTGGGAGAAAAAAAAAGAAGCTGATGCAGAGAAG
AAGAAGGAGAGAGATGAGAGGCACCAAAAGTCATATGAACTAGATAAGCAGAGGCTTGAGTTAGATAAAAAAAAGGTCGC
GAATGAGANGGATGAGATACAGTTGAAGAGGATNTTAGAAGAAGAGAGAATTATGANAATGGACATTTCTTCCAAGCCTC
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20858.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis