Browse Element(s) Details


OsAffx.21134.1.S1_at

Description tigr:9629.m02625
TID=OsAffx.21134.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2747011/11Ubiquitin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27430OsAffx.29396.4.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.2.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430Os.31929.3.S1_x_at2/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.5.S1_x_at1/111+15635934..15639882hypothetical protein
LOC_Os01g27440Os.17546.2.S1_x_at1/111+15643761..15650064retrotransposon protein, putative, unclassified
LOC_Os01g27450OsAffx.20451.1.S1_at1/111+15659363..15660813hypothetical protein
LOC_Os01g27459NANA1+15661976..15662155NA
LOC_Os01g27470OsAffx.21134.1.S1_at11/111+15663396..15664454Ubiquitin family protein
LOC_Os01g27480Os.30790.1.S1_at11/111+15671246..15672275glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27490Os.2688.1.S1_at10/111+15673218..15674807Leucoanthocyanidin dioxygenase, putative, expressed
LOC_Os01g27500OsAffx.14671.1.S1_at11/111+15677420..15678434hypothetical protein
LOC_Os01g27510OsAffx.23418.2.S1_s_at11/111+15680841..15681245hypothetical protein
LOC_Os01g27520Os.10973.1.S1_at11/111+15683651..15687548Asparaginyl-tRNA synthetase, cytoplasmic 3, putative, expressed
LOC_Os01g27530OsAffx.2096.1.S1_at11/111+15687898..15688817expressed protein
LOC_Os01g27530Os.52368.1.S1_at3/111+15687898..15688817expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21134.1.S1_at--543--10291Chr01:15663854..15663878 (25 bp)
TTTCATGTACAACGGCAGGGAGATC
LOC_Os01g27470
OsAffx.21134.1.S1_at--25--9651Chr01:15663877..15663901 (25 bp)
TCAGTTTCTATCAGACGCCGGAGAA
LOC_Os01g27470
OsAffx.21134.1.S1_at--673--5451Chr01:15663911..15663935 (25 bp)
GAACGACGGCGATGAGATCACCTTC
LOC_Os01g27470
OsAffx.21134.1.S1_at--485--6451Chr01:15663926..15663950 (25 bp)
GATCACCTTCCATCTGTTCAGCAAG
LOC_Os01g27470
OsAffx.21134.1.S1_at--695--371Chr01:15663975..15663999 (25 bp)
ATCAAGGGCAGCACCGACGATGGCG
LOC_Os01g27470
OsAffx.21134.1.S1_at--1023--951Chr01:15664035..15664059 (25 bp)
AGGACCGACGAGTTGCAGCGCCTGA
LOC_Os01g27470
OsAffx.21134.1.S1_at--354--9031Chr01:15664048..15664072 (25 bp)
TGCAGCGCCTGATCGATTACTACTT
LOC_Os01g27470
OsAffx.21134.1.S1_at--1078--10651Chr01:15664195..15664219 (25 bp)
TTCCGGCGAGCAAACCGAGCAGGTT
LOC_Os01g27470
OsAffx.21134.1.S1_at--942--4071Chr01:15664210..15664234 (25 bp)
CGAGCAGGTTCGTGACCATCGATTT
LOC_Os01g27470
OsAffx.21134.1.S1_at--879--10331Chr01:15664357..15664381 (25 bp)
TTTACGAGGGCCGTCGTGTTCAGGA
LOC_Os01g27470
OsAffx.21134.1.S1_at--799--9631Chr01:15664376..15664400 (25 bp)
TCAGGACTCGCAAACTCCGGATGAT
LOC_Os01g27470
Target Sequence 
TTTCATGTACAACGGCAGGGAGATCAGTTTCTATCAGACGCCGGAGAAATGTGACATGAACGACGGCGATGAGATCACCT
TCCATCTGTTCAGCAAGCCGAGCACCTTCGTCACCCTCACGATCAAGGGCAGCACCGACGATGGCGGCCGCAGCGGCGTC
GTCGTCACCCGCCCCATGCGCAGGACCGACGAGTTGCAGCGCCTGATCGATTACTACTTCGCCATGGTGCCAACTGATGA
TCAGAACGGCGAGTGGGCGGTCACGTACGGTGGCAGGCAGGTCGGCGGCGAGGAGACGCCCGCGGATTACGAGATGGAGG
ACGGCGATCAGCTCCGCCTCGTTCCGGCGAGCAAACCGAGCAGGTTCGTGACCATCGATTTGTTAACCATGGTGAAGGCC
AAGCGCACATACACCCTGCGAAGGACTGACAAGCTGCAGGGTTTGATGGACCTGTGCTTAAGCAGGGAGCCTGCAAGNNT
NNNNANNNNNGGNTGNGTTTTAATTTACGAGGGCCGTCGTGTTCAGGACTCGCAAACTCCGGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis