Browse Element(s) Details


OsAffx.21148.2.S1_at

Description tigr:9629.m03070
TID=OsAffx.21148.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g328409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32790Os.13027.1.S1_at9/111+18321451..18324615expressed protein
LOC_Os01g32800Os.22605.1.S1_at11/111+18326150..18329709PCI domain containing protein, expressed
LOC_Os01g32810OsAffx.21149.1.S1_x_at7/111+18331624..18331974hypothetical protein
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein
LOC_Os01g32860OsAffx.11288.1.S1_at2/111+18358262..18359463hypothetical protein
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21148.2.S1_at--677--9471Chr01:18350353..18350374 (22 bp)
TCTGTTTCTACCACCTTGCAATAAA
LOC_Os01g32840
OsAffx.21148.2.S1_at--315--6491NONE
GATACCTAATTTGTTGTCACTGGGA
NONE
OsAffx.21148.2.S1_at--1132--7091NONE
GTCACTGGGACTAGGAGGATTCTAC
NONE
OsAffx.21148.2.S1_at--485--10051Chr01:18351259..18351283 (25 bp)
TAGGGAACCATCTTTGCCAGGTGTT
LOC_Os01g32840
OsAffx.21148.2.S1_at--601--6491Chr01:18351297..18351321 (25 bp)
GATAGGACCCTATATGGCTTACATA
LOC_Os01g32840
OsAffx.21148.2.S1_at--1160--5671Chr01:18351330..18351354 (25 bp)
GACATTATAGTGAACCATCTTTGGA
LOC_Os01g32840
OsAffx.21148.2.S1_at--26--8631Chr01:18351383..18351407 (25 bp)
TGGTGTACTGATGCACAAGAGTGTC
LOC_Os01g32840
OsAffx.21148.2.S1_at--913--111Chr01:18351419..18351443 (25 bp)
ATTCTATACCATAATCGTGCTCCAC
LOC_Os01g32840
OsAffx.21148.2.S1_at--636--7311Chr01:18351435..18351459 (25 bp)
GTGCTCCACGACATAGCCGTTCATT
LOC_Os01g32840
OsAffx.21148.2.S1_at--646--1671Chr01:18351449..18351473 (25 bp)
AGCCGTTCATTCTGATTACTTTCAA
LOC_Os01g32840
OsAffx.21148.2.S1_at--785--6971Chr01:18351482..18351506 (25 bp)
GTACGAAGCCCTACAATGCAAAATT
LOC_Os01g32840
Target Sequence 
TCTGTTTCTACCACCTTGCAATAAAACTAGAGCTTCACATAGACAGATACCTAATTTGTTGTCACTGGGACTAGGAGGAT
TCTACATTATAGGGAACCATCTTTGCCAGGTGTTCAACAAGTTTAGTGATAGGACCCTATATGGCTTACATATATTCAAA
GACATTATAGTGAACCATCTTTGGATAGGGCTTCGCGTGAAGTTTGTGTCATATGGTGTACTGATGCACAAGAGTGTCTT
GCATTTGCAATTCTATACCATAATCGTGCTCCACGACATAGCCGTTCATTCTGATTACTTTCAATGGATAATGTACGAAG
CCCTACAATGCAAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21148.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis