Browse Element(s) Details


OsAffx.21372.1.S1_x_at

Description gb:NM_192729.1
DB_XREF= gi:34912541
GEN=P0410E03.9
TID=OsAffx.21372.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative MAP kinase (P0410E03.9), mRNA.
PROD=putative MAP kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g495202/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein
LOC_Os02g49510Os.52768.1.S1_at9/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.18333.1.S1_at6/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.22086.1.S1_x_at2/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49520Os.50290.1.S1_at11/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.9217.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.21372.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein
LOC_Os02g49560OsAffx.12566.1.S1_at11/112+30289740..30290249bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21372.1.S1_x_at--667--9273Chr02:30264439..30264463 (25 bp)
TCCGAAAGGTAGACGACGAGCCGCT
LOC_Os02g49520
OsAffx.21372.1.S1_x_at--608--5871Chr01:24428259..24428283 (25 bp)
GAGCCGCTCCGCAACAAAGCCATGG
NONE
OsAffx.21372.1.S1_x_at--996--4391Chr01:24428191..24428244 (25 bp)
GCCAACTCGGATACCACCGTGGTGA
NONE
OsAffx.21372.1.S1_x_at--1071--751Chr01:24428154..24428178 (25 bp)
ATGTCCTCACGTCCAAGTACTCCAT
NONE
OsAffx.21372.1.S1_x_at--156--10632Chr02:30264585..30264609 (25 bp)
TTCGTCCACATGCTCAAGTGCTTCA
LOC_Os02g49520
OsAffx.21372.1.S1_x_at--583--2851Chr01:24428107..24428131 (25 bp)
AAGTGCTTCATTCCCGACGAGCTCA
NONE
OsAffx.21372.1.S1_x_at--174--9231Chr01:24427991..24428015 (25 bp)
TCCATCCTGGAGCTCCCGGACTGAA
NONE
OsAffx.21372.1.S1_x_at--864--9291Chr01:24427978..24428002 (25 bp)
TCCCGGACTGAAGCGCTCGGTGTCG
NONE
OsAffx.21372.1.S1_x_at--298--6211Chr01:24427946..24427970 (25 bp)
GAGGCTACTCATCACCCTGTCAGTG
NONE
OsAffx.21372.1.S1_x_at--985--4991Chr01:24427801..24427825 (25 bp)
GCATGTCGGCGGTGTCATGCTCCAC
NONE
OsAffx.21372.1.S1_x_at--484--7451Chr01:24427793..24427814 (22 bp)
GTGTCATGCTCCACCGTGCGAGCCG
NONE
Target Sequence 
TCCGAAAGGTAGACGACGAGCCGCTCCGCAACAAAGCCATGGCCGTCGCCGTCCTCGCCAACTCGGATACCACCGTGGTG
AATAAAGAAGGCCATGTCCTCACGTCCAAGTACTCCATCTACGACTTCGTCCACATGCTCAAGTGCTTCATTCCCGACGA
GCTCAACGCCTCAACCTCAGCATCATCCGTGTCACCGCGCACGCCAATTCGCTCGCCGCCGTGGTCTCGGTCGTCAAGGA
GAACCACCGGGGCCACTCCATCCTGGAGCTCCCGGACTGAAGCGCTCGGTGTCGCCGCGACGAGGCTACTCATCACCCTG
TCAGTGCACATGGGGCACACCATCGCCGAGAGGCTCCGCAAGATGCAGAGCGCCGGCGCCAGCGAAGGAGGCAGACGAGG
GGCGGAGGGCCGCTCTGCTACGGGCGGTTCGCGGTCGTGGGCGGCGGCATGTCGGCGGTGTCATGCTCCACCGTGCGAGC
CG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21372.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis