Browse Element(s) Details


OsAffx.21875.1.S1_at

Description tigr:9629.m07101
TID=OsAffx.21875.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lecithin:cholesterol acyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7180011/11Lecithin:cholesterol acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed
LOC_Os01g71790Os.34520.1.S1_at11/111+41911216..41912136expressed protein
LOC_Os01g71800OsAffx.21875.1.S1_at11/111+41912754..41913912Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os01g71810Os.18664.2.S1_x_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_a_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_x_at5/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810OsAffx.29203.1.S1_x_at3/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_x_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_a_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.2.S1_x_at8/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71830Os.18664.2.S1_x_at4/111+41930154..41931501Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71840OsAffx.28220.1.S1_s_at10/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed
LOC_Os01g71840Os.44572.1.S1_x_at9/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21875.1.S1_at--51--1751Chr01:41913418..41913442 (25 bp)
ACGTACGGGAACAGGAGCTTCGCGA
LOC_Os01g71800
OsAffx.21875.1.S1_at--545--7391Chr01:41913493..41913517 (25 bp)
GTGATCACGCGAGCCAAGAACTACT
LOC_Os01g71800
OsAffx.21875.1.S1_at--421--5791Chr01:41913523..41913547 (25 bp)
GACGACATGCCGGAGTTTCTCTCGG
LOC_Os01g71800
OsAffx.21875.1.S1_at--901--8631Chr01:41913685..41913709 (25 bp)
TGGGACGGCAACTTCAGCGCGAAGC
LOC_Os01g71800
OsAffx.21875.1.S1_at--86--3391Chr01:41913699..41913723 (25 bp)
CAGCGCGAAGCCTCAGGTGGTGAAC
LOC_Os01g71800
OsAffx.21875.1.S1_at--980--7591Chr01:41913736..41913760 (25 bp)
GGGCAGATCAACTTGGACACCGTGT
LOC_Os01g71800
OsAffx.21875.1.S1_at--855--10851Chr01:41913748..41913772 (25 bp)
TTGGACACCGTGTTGGCATTAGAAA
LOC_Os01g71800
OsAffx.21875.1.S1_at--1111--991Chr01:41913772..41913796 (25 bp)
AGGTTGATCGGTGATGACCCGGATC
LOC_Os01g71800
OsAffx.21875.1.S1_at--556--4191Chr01:41913789..41913813 (25 bp)
CCCGGATCAGGGTTACTTCAAGTCA
LOC_Os01g71800
OsAffx.21875.1.S1_at--462--7131Chr01:41913844..41913868 (25 bp)
GTCATCTCCGATGAATTAGCGCTCA
LOC_Os01g71800
OsAffx.21875.1.S1_at--420--151Chr01:41913858..41913882 (25 bp)
ATTAGCGCTCAAGCGTGTGGTCAGC
LOC_Os01g71800
Target Sequence 
ACGTACGGGAACAGGAGCTTCGCGAGCATGTTCTCCCTCCTGCCGTCGCCGGCGGTGTACGGCGACACGCCACTGGTGAT
CACGCGAGCCAAGAACTACTCCGCCGACGACATGCCGGAGTTTCTCTCGGCGGCTGGTTTCTCCGACGACGAGGTGGCGC
TCTACCGGGCGAGGGCGCTGCCGGTGACCCTGGATTTCCGGGCGCCGCTCGTGCCGCTGACGTCCATCAACGGCGTCGGT
GTGCCGACGGTAGATAAGCTGGTGTTCTGGGACGGCAACTTCAGCGCGAAGCCTCAGGTGGTGAACGGCGACGGCGATGG
GCAGATCAACTTGGACACCGTGTTGGCATTAGAAAGGTTGATCGGTGATGACCCGGATCAGGGTTACTTCAAGTCAATTT
TGATCCCCAACACGACGCACAAGGGTGTCATCTCCGATGAATTAGCGCTCAAGCGTGTGGTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis