Browse Element(s) Details


OsAffx.21931.1.S1_at

Description tigr:9629.m07251
TID=OsAffx.21931.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7322011/11Peroxidase 12 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73140Os.5520.1.S1_at11/111+42746256..42748224ubiquitin-fold modifier 1 precursor, putative, expressed
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73180OsAffx.21933.1.S1_at9/111+42760749..42761018hypothetical protein
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed
LOC_Os01g73240OsAffx.9740.1.S1_at11/111+42783687..42784325expressed protein
LOC_Os01g73240OsAffx.9740.1.S1_s_at11/111+42783687..42784325expressed protein
LOC_Os01g73250OsAffx.11838.1.S1_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250Os.22580.1.S1_s_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250OsAffx.11838.1.S1_x_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73260OsAffx.24026.1.S1_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73260OsAffx.24026.1.S1_x_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73270Os.31324.1.S1_at3/111+42797175..42798698expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21931.1.S1_at--683--5971Chr01:42773721..42773745 (25 bp)
GAGACAGCGCCGAGTTCGCGTCGCA
LOC_Os01g73220
OsAffx.21931.1.S1_at--1158--7211Chr01:42773999..42774023 (25 bp)
GTCCGGACGCCCAACGTGTTCGACA
LOC_Os01g73220
OsAffx.21931.1.S1_at--1104--1811Chr01:42774005..42774029 (25 bp)
ACGCCCAACGTGTTCGACAACATGT
LOC_Os01g73220
OsAffx.21931.1.S1_at--872--751Chr01:42774026..42774050 (25 bp)
ATGTACTACGTCAACCTTGTCAACC
LOC_Os01g73220
OsAffx.21931.1.S1_at--463--5731Chr01:42774032..42774056 (25 bp)
TACGTCAACCTTGTCAACCGGGAGG
LOC_Os01g73220
OsAffx.21931.1.S1_at--211--1711Chr01:42774098..42774122 (25 bp)
ACCAAGCCCATCGTCGAAAAGTTCG
LOC_Os01g73220
OsAffx.21931.1.S1_at--826--4211Chr01:42774123..42774147 (25 bp)
CCGCCGACGAGAAGGCATTCTTCGA
LOC_Os01g73220
OsAffx.21931.1.S1_at--274--4031Chr01:42774130..42774154 (25 bp)
CGAGAAGGCATTCTTCGACCAGTTC
LOC_Os01g73220
OsAffx.21931.1.S1_at--1071--1711Chr01:42774147..42774171 (25 bp)
ACCAGTTCGCCGTGTCCATGGTGAA
LOC_Os01g73220
OsAffx.21931.1.S1_at--329--1011Chr01:42774210..42774234 (25 bp)
AGGTTCGCCGGAACTGCTCAGCCAG
LOC_Os01g73220
OsAffx.21931.1.S1_at--283--9331Chr01:42774214..42774238 (25 bp)
TCGCCGGAACTGCTCAGCCAGAAAC
LOC_Os01g73220
Target Sequence 
GAGACAGCGCCGAGTTCGCGTCGCAGCAGGACGTGCTGAGCGGGCTGCCGCCGCCGACCGCCGCCGTGCCGGCGCTGCTG
GACGCCCTGGCCAAGATCAAGCTCGACGCCACCGACCTGGTGGCGCTCTCCGGCGGCCACACCGTGGGCCTCGCGCACTG
CAGCTCCTTCGAGGGCCGCCTCTTCCCGCGCCGGGACCCGGCCATGAACGCCACCTTCGCCGGCCGGCTCCGGCGAACCT
GCCCGGCGGCGGGCACCGACCGCCGGACGCCGAACGACGTCCGGACGCCCAACGTGTTCGACAACATGTACTACGTCAAC
CTTGTCAACCGGGAGGGGCTCTTCACCTCCGACCAGGACCTCTTCGCCGACGCCGCCACCAAGCCCATCGTCGAAAAGTT
CGCCGCCGACGAGAAGGCATTCTTCGACCAGTTCGCCGTGTCCATGGTGAAGATGGGGCAGATCAGCGTGCTCACCGGCT
CGCAGGGCCAGGTTCGCCGGAACTGCTCAGCCAGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis