Browse Element(s) Details


OsAffx.22086.1.S1_x_at

Description gb:NM_188584.1
DB_XREF= gi:34904251
GEN=P0452F10.14
TID=OsAffx.22086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0452F10.14 (P0452F10.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g495102/11amino acid transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49480Os.52592.1.S1_at11/112+30227417..30229842Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein
LOC_Os02g49510Os.52768.1.S1_at9/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.18333.1.S1_at6/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.22086.1.S1_x_at2/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49520Os.50290.1.S1_at11/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.9217.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.21372.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22086.1.S1_x_at--801--4492Chr05:11453509..11453533 (25 bp)
GCCGTGCGTCGCTATTGCCGGCTTG
NONE
OsAffx.22086.1.S1_x_at--1001--7292Chr05:11453512..11453536 (25 bp)
GTGCGTCGCTATTGCCGGCTTGCCG
NONE
OsAffx.22086.1.S1_x_at--778--4873Chr09:3359783..3359807 (25 bp)
GCTATTGCCGGCTTGCCGCACCATG
NONE
OsAffx.22086.1.S1_x_at--453--9352Chr09:3359812..3359836 (25 bp)
TCGCTGCTCGCTTGCCCGTGCGTTG
NONE
OsAffx.22086.1.S1_x_at--292--3631Chr01:7077762..7077786 (25 bp)
CTTGCCCGTGCGTTGTACAGGAGCT
NONE
OsAffx.22086.1.S1_x_at--1061--7291Chr01:7077755..7077779 (25 bp)
GTGCGTTGTACAGGAGCTGCCTCGC
NONE
OsAffx.22086.1.S1_x_at--693--10811Chr01:7077750..7077774 (25 bp)
TTGTACAGGAGCTGCCTCGCCGCAG
NONE
OsAffx.22086.1.S1_x_at--353--10652Chr09:3359873..3359896 (24 bp)
TTCCCGTGGCGCTGCGCCAGATTCG
NONE
OsAffx.22086.1.S1_x_at--309--2714Chr09:3359931..3359956 (25 bp)
AAGCTTCCCTGCTCGCTGCTTGCTG
NONE
OsAffx.22086.1.S1_x_at--102--9113Chr10:10712914..10712938 (25 bp)
TGCTCGCTGCTTGCTGGCTCGCTGG
NONE
OsAffx.22086.1.S1_x_at--118--8491Chr01:7077630..7077654 (25 bp)
TGGCTCGCTGGCTCACTGGCCGACG
NONE
Target Sequence 
GCCGTGCGTCGCTATTGCCGGCTTGCCGCACCATGCTGCTCGCTGCTCGCTTGCCCGTGCGTTGTACAGGAGCTGCCTCG
CCGCAGCCTTCGCCGCCGCCTTCCCGTGGCGCTGCGCCAGATTCGCCGCCTTCCCATACGCTGCGCCATCCTGCCGCCAA
GCTTCCCTGCTCGCTGCTTGCTGGCTCGCTGGCTCACTGGCCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22086.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis